RnoINT0066901 @ rn6
Intron Retention
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10678419-10679139:-
Coord C1 exon
chr3:10679089-10679139
Coord A exon
chr3:10678502-10679088
Coord C2 exon
chr3:10678419-10678501
Length
587 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ACTTGCTCTTCCTTTGGCAGGAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATTGGCTTCAGTCTTGATCGGACCAAGAATGATGGCTTTTCTTCTTACCTG
Seq A exon
GTAAGTTGCCTTTTAAAAACAATTTCTGTGTGTCGGTATTTTGCCTGCATGTGTGTCAGCACACTGCATGCTTGCCTGGTGCCACCAGAGGATCCCCTGGAACTGAGTGACAGTTGTGATCGTGGATGCTGAGAATCAGGATCTCTGCAAGAACTTGGTAAGTGCTCTTGACAACTGAGGCTTCTTTCCAGCCCCCGCCTCCTTTTAAAGGGACAGTAGTGAAGACAGGGTTTCATTCTGTAGTCCAGGGTGCTCTCAAACTTAGAGCAGTCCTCCTGCCTCGGTCTCCCAAGTTCTAGGTTACAGGCATGAGCCGCCACCACACTTTGCAACCTCGACCATCCCAGAATACACTGAAGAGAGTTCCTGCCTCTACTTTAGAGGTGCTAGGATTGGGGCCCAGTCAGTCTTAGGTCACAGTCTAACTGGTGCCCTCACTGGGGCTCAGGACGCCCTTCGGCCCACAGTCCTGTTCTAAGGTGGTGCTGCTGAAGCCCTAGGCTCTGTTGGAAGGAGCCCGAGCTGCCATCTGCCTTGGCCATCCATGGTGAACGTGAAAACACACACACTTGCTCTTCCTTTGGCAG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAAAAAAAGTCCATGTCTTCTGTCACTCTGCTCATCTTAGACATCTCCGGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589:ENSRNOT00000037742:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]