HsaINT0071251 @ hg38
Intron Retention
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:HGNC:17830]
Coordinates
chr9:130076412-130077374:+
Coord C1 exon
chr9:130076412-130076462
Coord A exon
chr9:130076463-130077298
Coord C2 exon
chr9:130077299-130077374
Length
836 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ATTGGCTCTTCCTTTCTCAGGAT
3' ss Score
10.76
Exon sequences
Seq C1 exon
ATTGGATTTAGCCTAGACCGTACAAAGAATGATGGCTTTTCTTCTTACCTG
Seq A exon
GTGAGTATTAAATGTGTGACCTGATTCATCTCTTCACCTGAGCCCAGGCCATTGAACGGGAACACCCTACTTCTTGCAGTTCCATTTTCATTTTTTTTTTGGAGTACGGTGGCACAATCATAGCTCACTGCAACCTTGACCTCCCAGGCTTAAGCGATCCTCCCGCCTCAGTCCCCTGAGTAGCTGGGACTACCAGCGTGTGCCACCACGCCTGCCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACATTTTGTTGGCCATGTCTCAAACTCCTGGACTCAAGGGATCCACCCACTGTGGCCTCCCAGAGTGCTAGGACTGCAGGCGTGAGCACCACGCCTGGCCACAGCGCCATTTCTTGAGGTAGTGGCTGCTTTGACTTCCAAGCATTTTTGAGAACCCACAGTTGGTTTACTTTTGTTTTTTGTTTTTTTTTTTGAGACAGAGTCTCACTCTTGTTGCCGAGGCTGGAGTGCAATGGTGTGATCTTGGCTCACTGCAACCTCCGCCTCCCTCGTTCAAGTGATTCTTCTGCCTCATCCTCCTGAGTAGCTGGGACTGCAGGTGCCCGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGTGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCCTGACCTCACGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCACCGGTTTACTATTTTGAATGGAGTTTGAGCCACGTATTTGCTATGTTCCTGAAAACTCTGTTCTTGTTCTAGTGTGAATGAATAAGATGATGTACAATTGGCTCTTCCTTTCTCAG
Seq C2 exon
GATGAAGATGTGAATTACTGTATTTTAAAGAAACAGTCTGTCTCTGTCACCCTTTTAATCCTAGACATCTCCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358:ENST00000493417:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development