GgaINT0124984 @ galGal4
Intron Retention
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5829282-5829644:+
Coord C1 exon
chr17:5829282-5829332
Coord A exon
chr17:5829333-5829555
Coord C2 exon
chr17:5829556-5829644
Length
223 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATGTTTTGCTTCATTGGCAGGAT
3' ss Score
7.33
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTGGATCGAACAAGGAATGATGGGTTCTCCACTTATCTG
Seq A exon
GTAAGAGATGTGAATTTTCTTTTCTATGCTAGGGACGTATCATAGTCTGTCTACTTCCATGAGAAGATGGAAGGAAGAAAGAACCATTAGATATGGGCAGGTTGTTACAGATAATCCAATTTTGCATCTTACTGGACTAAAAATAGTTACCTCCACCTGAGGGAGAACATGCCCATTCTTATTAACAGGAAGGTACTTTGAAGATGTTTTGCTTCATTGGCAG
Seq C2 exon
GATGAAGAAGTGGATTACTGTATTTTGAATAAGAAACCTGAGCAAGGTGTTTCTGTTGTAATCTTACTTCTGGACTTCAAAAATGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052:ENSGALT00000006449:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGTTCAGTCTGGATCGA
R:
ACATCATTTTTGAAGTCCAGAAGT
Band lengths:
140-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]