BtaINT0068406 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18974221-18974581:-
Coord C1 exon
chr7:18974531-18974581
Coord A exon
chr7:18974304-18974530
Coord C2 exon
chr7:18974221-18974303
Length
227 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCTACTGCCCACCCTCCAGAAT
3' ss Score
6
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTGACCCGGGTGAGATCTGGCAGCATTCGCTCCTACTCA
Seq A exon
GTGAGTGGTAGGGATGAAAGTGGGGAGAGGACGGTGGAGGGGCAGAGGCAGAGGAAGGGGAGGGTTGTCTGTTGGCCTCTGAAACTCAGAGGCCCCTGTCCTCTCCCAGAGAGGAAGGGAGAAACTCACCCTTGCCCCGGGGAAGGAGGAGAGGATGGGGAGGGAGGCAGGGTGGGCCTGGACCAGTGGGTGGGGGTAACCAAAGCTCCCTACTGCCCACCCTCCAG
Seq C2 exon
AATCGGGACTCCCATGAGTGTCCTCTCCGGAAAAACAGTAGCAGCCTCCTGGTTCTCTTCCTCATCAACACCAAGGATCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291:ENSBTAT00000022987:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTCAGTCTGACCCG
R:
CCAGATCCTTGGTGTTGATGAGG
Band lengths:
132-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]