MmuINT0072830 @ mm9
Intron Retention
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57384452-57384768:-
Coord C1 exon
chr17:57384718-57384768
Coord A exon
chr17:57384535-57384717
Coord C2 exon
chr17:57384452-57384534
Length
183 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCCTCTGTCCACTCCCCAGAGA
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTGGGGTTCAGCTTGAGCAGAGTTCGGTCTGGCAGTGTCCGCTCCTACTCG
Seq A exon
GTGAGTGGAGAGCATCGGGAGGGATGAGGGAGAATGGGCGTGGTGTTGGGGGCCTCTCTTCTCCGTGGTACGCTTACAGCCAAGGAGGGGCAGGGAGAAGCTGTGGGTGGATGGGGAAGCACACTGAACAAGGCTGGATCCATGGGCCCGCTGTAACCCCGGCCCCCTCTGTCCACTCCCCAG
Seq C2 exon
AGACGGAACTCCCATGAATGCCCTCTGGATAGAAACAGCAGCAACTTCCTGGTCCTGTTCCTCATCAATATCAAGGACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-Gpr108:NM_030084:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCAGCTTGAGCAGAGTT
R:
TGCAGGTCCTTGATATTGATGAGG
Band lengths:
131-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: