RnoINT0066917 @ rn6
Intron Retention
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9707346-9707649:+
Coord C1 exon
chr9:9707346-9707396
Coord A exon
chr9:9707397-9707566
Coord C2 exon
chr9:9707567-9707649
Length
170 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCCTCTGTCCACTCCCCAGAGC
3' ss Score
8.37
Exon sequences
Seq C1 exon
GTGGGATTCAGCTTGAGCCGAGTTCGGTCCGGCAGTGTTCGCTCCTACTCG
Seq A exon
GTGAGTGGAGAACATCAGAGGGGACGAGGGAGAACAGGTGTGGTGTTGGGGACCCTGTCTTCTCCATGTTAGGACTGCAGGGAAAGGCCATGGGGTGGACAGGGAAGCACACTGAACAAGGCTAAACCCATGGGCGGTTGTAACCCAGGCCCCCTCTGTCCACTCCCCAG
Seq C2 exon
AGCCGGAATTCCCATGAATGCCCTCTGGAGAGAAACAGCAGCAACTTCCTGGTCCTGTTCCTCATCAATATCAAGGACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128:ENSRNOT00000075403:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTCAGCTTGAGCCGAGTT
R:
TGCAGGTCCTTGATATTGATGAGG
Band lengths:
131-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]