Special

HsaINT0071271 @ hg38

Intron Retention

Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6735622-6735958:-
Coord C1 exon
chr19:6735908-6735958
Coord A exon
chr19:6735705-6735907
Coord C2 exon
chr19:6735622-6735704
Length
203 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCTCCTGCCCACCCCCCAGACC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTCAGCCGGGTTCGGTCTGGCAGAGTTCGCTCCTATTCA
Seq A exon
GTGAGTGGAGGGCATGGGGAAGACGGGAGAAGGGGCTGGAGGGAGGGGGTAGGGTCTGTCCTCTGCATCTGTAACCCAAGGGCCCCTGTTCTTTGTCAGAGGCAGGAGCAGGAAGATCCCGTGGGTGGACAGGGAGGGAGACAGGGTGGAGCTGGACCAGGAGAGGAGTAACCAAGACTCACTCCCTCCTGCCCACCCCCCAG
Seq C2 exon
ACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTTCCTCATCAACACCAAGGATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734:ENST00000264080:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTCAGTCTCAGCCG
R:
TGCAGATCCTTGGTGTTGATGA
Band lengths:
133-336
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development