HsaINT0071271 @ hg38
Intron Retention
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:HGNC:17829]
Coordinates
chr19:6735622-6735958:-
Coord C1 exon
chr19:6735908-6735958
Coord A exon
chr19:6735705-6735907
Coord C2 exon
chr19:6735622-6735704
Length
203 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCTCCTGCCCACCCCCCAGACC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTCAGCCGGGTTCGGTCTGGCAGAGTTCGCTCCTATTCA
Seq A exon
GTGAGTGGAGGGCATGGGGAAGACGGGAGAAGGGGCTGGAGGGAGGGGGTAGGGTCTGTCCTCTGCATCTGTAACCCAAGGGCCCCTGTTCTTTGTCAGAGGCAGGAGCAGGAAGATCCCGTGGGTGGACAGGGAGGGAGACAGGGTGGAGCTGGACCAGGAGAGGAGTAACCAAGACTCACTCCCTCCTGCCCACCCCCCAG
Seq C2 exon
ACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTTCCTCATCAACACCAAGGATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734:ENST00000264080:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTCAGTCTCAGCCG
R:
TGCAGATCCTTGGTGTTGATGA
Band lengths:
133-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development