HsaINT0071271 @ hg19
Intron Retention
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6735633-6735969:-
Coord C1 exon
chr19:6735919-6735969
Coord A exon
chr19:6735716-6735918
Coord C2 exon
chr19:6735633-6735715
Length
203 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCTCCTGCCCACCCCCCAGACC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGGGTTCAGTCTCAGCCGGGTTCGGTCTGGCAGAGTTCGCTCCTATTCA
Seq A exon
GTGAGTGGAGGGCATGGGGAAGACGGGAGAAGGGGCTGGAGGGAGGGGGTAGGGTCTGTCCTCTGCATCTGTAACCCAAGGGCCCCTGTTCTTTGTCAGAGGCAGGAGCAGGAAGATCCCGTGGGTGGACAGGGAGGGAGACAGGGTGGAGCTGGACCAGGAGAGGAGTAACCAAGACTCACTCCCTCCTGCCCACCCCCCAG
Seq C2 exon
ACCCGGGATTTCCAGGACTGCCCTCTCCAGAAAAACAGTAGCAGTTTCCTGGTCCTGTTCCTCATCAACACCAAGGATCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734-GPR108:NM_020171:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTTCAGTCTCAGCCG
R:
TGCAGATCCTTGGTGTTGATGA
Band lengths:
133-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)