BtaINT0068491 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22384722-22386441:+
Coord C1 exon
chr2:22384722-22384858
Coord A exon
chr2:22384859-22386345
Coord C2 exon
chr2:22386346-22386441
Length
1487 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
3' ss Seq
ATTTTCTCCTTCCTTTACAGAAT
3' ss Score
12.08
Exon sequences
Seq C1 exon
ATGAACATTGTGTGAGTCGCTGTAACTCCCAGAGCTGCATATTAGCCCAGGAAGAGGAGCAGTATCTACACAGTGGAGACCAGCAACTGACTCGACATGTGTTGCTGTGTTTACTTCTCATTATTGGCCTGTTTGCT
Seq A exon
GTAAATGTTTCTTTTGATTTTGTTTGGGAGCCATTTCTTTAAATGTTTGACAAAGGTTTTTTCCAGGCATCTGGGAGAAACTTGGTTGCTCCTTCCCAGGGGAGTTGCAGCACTAGCATCTCCTAATCGTGAGCTAATGTTTTGGGAGGAAGAAGAATGAGTAATTCACATTACTCTGTTGCTTAAGTGCTTCAGTAACTCATTTTGCTTTGAATACTTATTCATCCTATGCTCTGAACCTAGAATTTGGAGTAAAACCAGTTATGTCTGTGATGTATACAAGGCTACTTAGTCCTAAGTTATTCCTTGACTGACTTCAGTAGATAAATGTCTACATGGTCTCTCAGAAGACAGTCCTCAGACAAATAAACTTTTAAAAATAATTTTACATTATGAAAATAATACAAGGACTTCGTACAATGGATACCATAGAGAAAAGAGGAAAAATATCCATCATACTATTACCTTCCCTTTTTTAATAGTTTTCATGGTTCTAATAATACATACAGATTTATGTCCTGCTTTGTGACTTATATCAAACATTTTCATGTTGCTGCAAAAGTGTTCTAATTGTTACTTTAAATAGCTCCTCAATAAACTATAGAGGATATGCATTACAATTCAATCATTTTCTTATGGATTGTTCCTAGATTTTTAGAATTCACTAATAAACATCTCAATGCAGTATATTTCCTTATCATAGATTCTCAAAAGTTGGAAAACCTGGATTAAATAGCATAAATATTTTTGTGTCTTTGGATGCATTCTATTAAGTTGTTTTCCAAAGGAGTAGTATAGGTTTGTAAAGTACTCTCACCAACATTGACTATTACAAATTTTTTACTTGATAATTTTATAAGTGAAATATAGCACTTCATTTTAAAATGCATTTGATTATCAAAGCATTTTTAAAAATTAGTTCTACAAAGTCTTCTTTTGTGAATTACTAGTTATTATATAATTCTTTGTGATGGTTCAAGTATAACTAGCCTAGTGATAGGCAATGGACCATGTAACCTATGAAGAAACTCTCTTACACTTTCCACACTGCAATGCTTGTTACATAGAATCGTATCAGCCAGCACCATTTTAGCTGCTGTTTAAGAACAAAAATCAAAAATTAAGAAATGGTGCCAAGAATTGCTGCTCGGTGATGTGATTGTTTTCCCTGTGTAAAACTAATTTTAAAATCAGACCTGTCTTAGGCTAGTTGAAGTCCTGATGTATTATGTAAGCTTCTGTATTATGGCTCATGTCTTCTTTCTTCAAATCTGATCAGAATAGATGCTGTTTGAATGACACCTGTCAAGAAGAGAGGTTTAAACCTCGTGTTTGAAAGACAAAGCCTCTGTATTCTCTTGGGTGTTTTTCCCTTTAGTCCTTTTCTTCCTAATTATTAAGTAGATAAATTATTGTACTATGTTCTGGATAGAGAGAAATGATCAGCTTGCTTCATTTTAAAGTCCTATTTTCTCCTTCCTTTACAG
Seq C2 exon
AATCTTTCCAGTTGTTTATGGTGGCTATTCAACCAAGAGCCTGGGAGACTATATGTTGAATTACAGTTTTTCTGTGCTGTGTTTAACTTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF152421=FAM53=PD(15.1=45.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACATTGTGTGAGTCGCTGT
R:
GGCCAAAGTTAAACACAGCACA
Band lengths:
230-1717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]