MmuINT0073079 @ mm9
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73189906-73191810:-
Coord C1 exon
chr2:73191674-73191810
Coord A exon
chr2:73190002-73191673
Coord C2 exon
chr2:73189906-73190001
Length
1672 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TCCTTTTGCTCCCTTCACAGAAT
3' ss Score
10.35
Exon sequences
Seq C1 exon
CCGACCACTGTGTGAGCCGTTGTGACTCCCAGAGCTGCATCCTCGCCCAGGAAGAAGAGCAGTACCTGCAGAGCGGAGACCCACAGCTGACCCGGCACGTCCTGTTGTGCTTGCTGCTTATCATCGGCCTCTTTGCT
Seq A exon
GTAAGTGTAAGCTCCTTCTGCTTCTATTCGGGGTCGTTTCTTTAAGATTTGGCTTCTCTCAGAGAAACTTCATGGCAGTTTTTGCAGAAGTATGGTGGCTAGGTCACCTGCATGTTAGCATTTAGCCAAATGTTTAAGGCACAGGACTGGGGACAAGGGATCCTCTGTTACCCAATGGTCTGTTTCCCTCCCGTCATTTACTCTGTACTTGGAGTTTGTCAAAACAAAGTGTTTCCACGGTGTATGCAGACCTCGTACTCCTGACAGCGGCCACGTAGCTGAATCATCTCCCGAAAGATAGTTTGCAAATGAACTTTTAAAAGCAACTTTTGGGGGCCTAGAGAGATGGCTCAGCAGTTAAGAGCACGTGCCGCCCTTGCAGAGCACATGCATTTGATTGTCAACATCTAGGGGACCTGATGCCCTCTGTGCGCACCAGGCAAGCACATGGTAAACATACATACACACAGAAAAACACTCATGCACATAAATCTTTAAAAAATATTTTAATTATGAAAATCTTTGTACTGATGAGAAAATTAAGAAAAATAACTATCACACTAATGCCTTCTAATTTTCCTTTTCTATTATTATTATTATTATTATTATGGAGATTGAACGCAGGGTGTGATGCATGTTAAACAGAAGCTGAACTACTGACTCTAACTTCAGCCCTGCCTGCTGATTTTTTAGCACACTCTGCATGGTTGTTCAGGCTTCTGTGTTGCTTTTTTGTCACCTATGTTAAACACGGTCACTTGACTGAAGTCCATGGAGCCATTGTTTTAGCATATTTTCCACTAACCACAGAAAAGCAACATCATAATTCATTCAAGTATTTCTCTATTTTTAATTGTTCATAATTTTTCAAAATGCTCTAATAAGCACCTCTAGACATTGTATTTTTGATTGGTACAGTCCCAAAATTGAGCGGCCTTCATCAGCGTCTGTATTTCTATAACGCAGGAGTGTTCTACTGATTTCTTCCCAAAGGGCTAATGCATATTTATAGAGTCTTCATGCCAGCATCAAATACTGAAGGATTTTTAATTTTATAGCGTATAAGTACAGTACTTTATTTTATTGTGTATATTTCTTTAGTTGTAGAGGGTTTTTAATTTGTTATCCTCATCTGTGAATTATCAGTTGTCATACATAATTCCTTAAGATGGCTCAAGTGTGACTTCTCTAGAGATGGGAGATAGGCCAGAACCCTCTGTAGCCTTTCTGGCCTTTATACTCGAACACTCACTACACAGCACGATACTAGCCAGCACCCCTTAACAGCCATCTAAGAGGAGAAGTCACAAAACAAGAAATGCTGCCAAAAGCTGCTGCTTAGTGATGTCATTGTTTTCCCTGTGTCAGACTAATTGTAAAATCTGTCCTGTGTAGGCTAGTCGGCAGTCCTGATATCTTATGTAAGCTGCTGTAATTTGGCGCATGTCTTCTTGCTTCAGATCTGATCAGAATAGACGCTGTTTGAATGGCATCTGTCAAGAGGAGAGGTTGAAACCTCTTGTTTGAGAGACAGAGCTTCTACATTCTCTTGCTGTTTTTCCCCTTTAGTCGTTCCCCCCCTAATGATTAGCTAGCTAAGTTATGCTGTGGGCTGGGTGGAGAGACGAGTCCCGTGCTTAATTCTCAAGTGCTCCTTTTGCTCCCTTCACAG
Seq C2 exon
AATCTCTCCAGCTGCCTGTGGTGGTTGTTCAACCACGAGACGGGACGGCTCTATGTTGAATTACAGTTTTTCTGTGCCGTGTTTAACTTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-Gpr155:NM_001080707:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACTGTGTGAGCCGTTG
R:
TGGCCAAAGTTAAACACGGCA
Band lengths:
230-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: