RnoINT0066970 @ rn6
Intron Retention
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60061118-60063052:-
Coord C1 exon
chr3:60062916-60063052
Coord A exon
chr3:60061214-60062915
Coord C2 exon
chr3:60061118-60061213
Length
1702 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CTTCTTTCTCCCCTTTACAGAAT
3' ss Score
12.19
Exon sequences
Seq C1 exon
CCGACCAGTGTGTGAGCCGCTGTGACTCCCAGAGCTGCATCCTCGCCCAGGAAGAAGAGCAGTACCTGCAGAGTGGAGACCCGCAGCTGACCCGTCACGTTCTGCTGTGCCTGCTGCTCATCATCGGCCTGTTTGCT
Seq A exon
GTGAGTGTCCCTTCCGCCCTCCCCGGGCCAGTCCTCTAAGGCACCTCACTGCTTGTTTGCAGAAGTGTGGGGGCTAGGCCAGCTGAAGTTTAGCATCTAGCTAGATGTTTGAGGCTCCTCCGTTGCCCAAGCGCTCCAACGGTCTGTTCCCCTCACGTCTATACTAGTGAACCTAGAATTTGTCAAAACAAAGTATTTCTGTGATATCTGCAGGACCTGTACTCCTAGCTGAATTATCTCCTGAAAGATATTTTTTTTAATGTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTTCCACTGAGCTAAATCCCCAACCCCGAAAGATATTTTTTAAGTAAACTTTTAAAAATAAATTTTGGGGGGGCTAGAGAGATGGCTCAGTATTTACAATTCAGTTCTATGGGATCTGATGCCCTCCTCTGGCCTCTGTGCACATCAGGCAACACATGGTAAACATATAGACACACAGGCAAACACTCGTACACATAAATCTTTAAAAAATATCTTAATTATGAAAATCTTCATGCTAATGATCATCTATTTTTTCATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTATTGAGATTGGACCCAGGGCGTCATGCATGTTAAGCAGAAGTTGGACTACTGACCTCTAACCTCAGCTCTGCCTGCTAATTATTTTTAGCGCACTCTGCATGCTATAACAGTATGTTCAGGCTTTCCGTGATGCTTTTTTTCACCTGTGTTAAACAAGGTCACGTGACTGAAGTCTCTGGAGCCATCGTTTTAACGTATTTCCCAATAACCACAGAAAAGCAACATCGTAATTTATTCAAGGACTTCGTCATGTTTAGCTGTTCATAATCTTCCAAAATGCTCTAATAAACACCTCCAGACATTGTCCTTTGATTGGTAGAGTCCCAAAATTGAGAGGCCTGCATCAGCCTCTGAACGCATTTCTACAACACAGGTGTATTCTACTGATTCCTTCCCAGAGCATTAATGCGTACTCAAAGTCCTCACGCCAGCTTTTCAGTTTTACAATTTACACGCACAGTACTTTACGTACTTTACTTTATTGTGTACATTTCTTTAATTGCAGAAGGGTTTTTATTTGTTCTCCTCATTTGTGAACGATCAGTCGTCATTCATAATTCCTTAAGGTGGCTCAAGTGTGACTTCTCTAGAACTGGGAGATAGGCCGGAAGCCTCTGTAGCCTTTACAGCTTTTACACTCGGACCCTCATTGCACAGCACGAGACTAGCCAGCTCCCCTTAACAGCCATCTCAGAACAAAAGTCACAAAATAAGAGGGGCTGCCAAGAGCTGCTGCTCAGTGATGTCATTGTTGTCACTGTGCCAGACTAATTTTAAAATCTGTCCCGCGTAGGCTGGTCGGCAGGCCTGACACATTATGTAAGCTTCTGTATTAGGGCGCATGTCTTCTTGCCTCAAATCTGATCAGAATAGACGCCGTTTGAATGGCATCTGTCAAGAAGGGAGGCTGAAACCTCTTGTCTGAAAGACAAAGCTTCTACATTCTCTTGATGTTTTCCCCCTTCAGTCTTTCCCCCTAATTATTAGCTAGCTAAGCGATACTGTGCGCTGGATGGAGGGAGACGATTCCCGGACTTAATTCTCAAGTGTTCTTCTTTCTCCCCTTTACAG
Seq C2 exon
AATCTCTCTAGCTGTCTCTGGTGGCTCTTTAACCACGAGACAGGACGGCTCTACGTTGAATTACAGTTTTTCTGTGCTGTGTTTAACTTCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485:ENSRNOT00000025158:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGTGTGTGAGCCGC
R:
TGGCCGAAGTTAAACACAGCA
Band lengths:
230-1932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]