GgaINT0049031 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18094905-18096320:+
Coord C1 exon
chr7:18094905-18095038
Coord A exon
chr7:18095039-18096224
Coord C2 exon
chr7:18096225-18096320
Length
1186 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
3' ss Seq
TGTTTTGTGTTTTTTAACAGAAT
3' ss Score
10.62
Exon sequences
Seq C1 exon
CTGATCAGTGTGTGAATCAGTGCAGTGCTCAGACCTGCGTACTGGCTCAGGAAGAACAGCTTCTACAGACTGGAGACAAACAGCTGGCCAGACATGTGCTGCTGTGCTTGCTTCTTGTTGTTGGCCTTTTTGCT
Seq A exon
GTAAATACTTTTTTCTCCCTGTTGTTTCTCTCATTGAGGTGGGGCCATTTTTAGGAAGGCTATGTAGACAGCCCAGTAAAAAAAAATCTTCCAATTCCTATTTTTTATAGCAATATATTAAGTAAATCAGAGGCTTTATTTTTTTCTCCTATTGTAGGAGGTGTATCATAAGATTAATTTATTGTGTGGCACAGAAAAATTAAAGGCAAGTTAAGGCCAACAGTGTCAGTGAGCAAGCTTCACTGGAGAACCCCAAAGGGACAGGAAAAAATTGGAATCACATCATTGGGTAATTAATTCATCACTACCACTCCTTGTCCTATTTTTTCTCAAGAGCTACTCGTCTTCTCTAGATATCAATTTAAAGTATGAAGTGAATTCTACTTCTGAAAGAGACTGTACAAGAATTGTTCCATTTGATTGTGCTTTAATTTGGAATTTGGACTTCATAGAGGTGTGTTAGTAAATAAGATAGCGTGGGATATTATTTGAAATGGAAGAATGTGTTTTCATTGTTTTTCATGCTGATCTGGGGACAAGGCAACTAAGTTGGTATTGCCTATTAAATTAAAAAAGTGTACTCTGAAACCTGCAGTAAAAATAGATATTGGAACAGGATATTTGATACATTTTCTGTGTTACAGTGGTGTCCCAAATTTGACCTTCTATTTTCAACTGAATCCAAATGAATACTTAGATAAGATGAAATGAGACCGATTACATTAGTTCATTATCCTTTTCTTTTATCAGGAATCTGAGATAGCTGAAGTGTGACGTGCTTCAGCTTAATGCAATTTTAACTATGTAGAAAATATGTAGAAAGCAGTGATGTCAGCTCAACAGGCCTCAAGACAAGTACTGCAAGTGTGTCTGGGCTAATATTGTCTGCGTTAGCTTGAATACCTGAGAATGCTTAAAGCAAGTTCCTTGTATAAACATGTGAACAGGCAGAACCTCTACAGTGATACGCTTTCCATTACTTTCTTTAAAAACAAAGAAGCTCATTTGTTTACTCCCAGCTATTAAGCCTAATTAAAATGATGTTTTAAAGCGTTTATTCTCTCCCACTGTCTTTATGTGAATTATTTGTTGAATAAAGACAGGCGAAGAGTAAGAAAGTGCTTTGGATTTAAATGTTTGGTTTGTAGTATTTTATAATTCTTGTTTGTTTTGTGTTTTTTAACAG
Seq C2 exon
AATCTTTCCAGTTGTTTATGGTGGCTGTTCAACCAAGAACCTGGAAGACTGTATGTGGAATTGCAGTTCTTTTGTGCTGTGTTTAATTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCAGTGTGTGAATCAGTGC
R:
CTGACCAAAATTAAACACAGCACA
Band lengths:
230-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]