HsaINT0071560 @ hg19
Intron Retention
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:22951]
Coordinates
chr2:175309809-175311475:-
Coord C1 exon
chr2:175311339-175311475
Coord A exon
chr2:175309905-175311338
Coord C2 exon
chr2:175309809-175309904
Length
1434 bp
Sequences
Splice sites
5' ss Seq
GCTGTAATG
5' ss Score
-3.98
3' ss Seq
CTTTTCTCCTTTCTTTACAGAAT
3' ss Score
12.27
Exon sequences
Seq C1 exon
ACAATCATTGTGTGAGTCGCTGTAACTCCCAGAGCTGCATATTAGCCCAGGAAGAAGAACAGTATCTACAGAGTGGAGACCAGCAACTGACCCGACATGTGTTGCTGTGTTTACTTCTCATCATTGGCCTGTTCGCT
Seq A exon
GTAATGGTTTTTTCTGGTTTTGTTTTGGGGCCATTTCTTTAAATTTTTGGCAAAGGTTTTATTCAGGCATCCGGGAAAAACTTAGTTGCTGCTTTCCAGAAGTGTGGTAGCTAGGTCACCTGAATTTGGATCTTGAGCTAAATAATTGCAGGTGTGAGGGGAAGAGATGAATCATTCACATTACTCTGAGGCCTGAGTGCTCCAATAGCTTATTCTGCTTAGAATCATTTATTCATTCTATGCTCTGAACCTAGAATTTGGTAAAAGCAGCTATTTCTTTTTATTTTTTATTTTTTTTTTTTTTGAGACAGAGTCTAACTCTGTTGCCCAGGCTGGAGTGAAGTGGCATGATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCTTCAGTCTCCTGAGTAGTTGGGATTACAGGCGCATGCCACCATGCCTGGCTAATTTTTGTATTTGTAGTAGAGACGGGGTTTCATCATGTTGGTCAGGCTGGTCTTGAACCCCTGACCTCAGGTGATCCACCCTCCTTAGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACTGCGCCAGGCCCAAAAGCAGCTATTTCAATAATGTACACAGGGCCACTTATTCCTAACATACCTGACTGACCAAAGTGGATAAATGCCTACATTAATGTCTCAGAACATGAAACCTCAGTGTCCACCAGAAAAAAAAAAAGAAAACCAAAAAACCTCTCAGAACATATTCCTCAGATAAACTTTAAAAAATAATTTTCAATTATCAAAATAACATAACTACTTCATATAATAGACCCTTACAAAATAGAGAAAATTAAAATACAGTATTTTATTTTTAGACTACATGCATTTCTTTGATTACTAAATGTCCTATTTGTGAATTATCAGTTCTTATTATATAATTCTTTGAGATGGTTCAAGTGTAACTCGTCCAGAGGTAGGAGATGGACCAGATAACCTATGAAGGAACGCTTTGCACACTGGGATGCTCGTGAGATAGTGTGATATCAGCCAATACCACTTTAAGTGCCATTTAAGAACAAAAATCAAAAAATAAGAAATGCTGCCAAGAATTGCTTAGTGATGTAATTGTTTTCATTGTGTAGAACTAAATTTAAAATCAGGCCTGTCTTAGGCTAGTTGGCAATCTTGATACATTATGTAAGCTTCTGTATTATGGCTCATGTCTTCTTGCTTCAAATCTGATCAGAATAGATAACTGTTTGAATGACATCTGTCAGGAGGAGAGGTTGAAACTTTCTTATTGAAAAGATAAAGCCTCTATATTCTCTCAGTGTTTTTCCGTCTAGTCTTTTTCCCTGTAATTATTAAGTAGGTAAGTTATTGTACTATGCTGTGGATGGAGAGGAATTATCAGCTTGCTTGATTTTAAAATACTCTTTTCTCCTTTCTTTACAG
Seq C2 exon
AATCTTTCCAGTTGTTTATGGTGGCTATTCAACCAAGAGCCTGGAAGACTTTATGTTGAGTTACAGTTTTTCTGTGCCGTGTTTAACTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-GPR155:NM_001033045:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATCATTGTGTGAGTCGCTGT
R:
ACCAAAGTTAAACACGGCACA
Band lengths:
230-1664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)