BtaINT0068494 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22390596-22394217:+
Coord C1 exon
chr2:22390596-22390733
Coord A exon
chr2:22390734-22393834
Coord C2 exon
chr2:22393835-22394217
Length
3101 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATCATTCCTTTGACATACAGGTG
3' ss Score
7.04
Exon sequences
Seq C1 exon
ACTTGAATTCCTATGGAACAGTAAAGAAACAGCAGAAAATAAGGATTCTTCTGTTCCTGAGGAAATAAAAATGACCTGTCAACAATTTATCCATTATCACCGTGACCTCTGTATCCAAAACATTGTGAAGGAAAGAAG
Seq A exon
GTAAGTACAGGTTCTAGATAATTATATATTAGATGATTAATTTTGGTTTGTGATAGGCTAACATGCTTGTAACTAACTTTGTTATTTTCAATAACACATATACACATAAAAGTTAAAATAGCTATAGGTCAGTTTATAGTTTAAGAAACAGCATTTATAAAAGCCATATAACTTTAATTTTTACATTTTTAAATGCCATTTATGATTTCCATATAAAATATGGAAACTTTAGAATGAACCAAAATATAGCAGAATATTAACATTCAGTTCATGCTGGCCATTAATATCTCTCACGAAACTTTGAATTTTGTATTTAGAAGTGATTTTATATTCCCTATCTCCTAAGGATATGCTAGTAATATGCTACTTCATATTACTAATGATATTATCAAGAAAGTAAAGTGAAATTTCTGTCTTTTAATTAATTCTGCTGCTTATTTTTTGACCTCAAGTCCTAATCTTTAGTCTTTGACATCATATTTATTCTTCTAATCCTCAGGCATGGAGTATACAGCAGGAAAGAATAAGCAAATGTTCTAGTGCCAATATATTTGGTTGTCGAAAAACAGGAAAAGAACAGAACATGATATAAAGAAGCTAATACTTTTTTTTCTGTAACTGAAAAGTTGAAAATCTATGAAAATTACCATTCAGGATAATTTATTTACATATATTCTGCCCCTGTATTTCATTAGAACCAGAAGGTATCCTGATTCAGCTAGTAGAAAGGGGATTCACTGGGTGGAGACCAACACTAAACCTCAATCCCTGGATCTGTCACTTTGTGGGAGATTACTAGCTGTGTGACATTGGGCAAGTTCAGTTCTCCAAACCTTAATTCTCTTCCTCTTTAAAATATCTAGCTCTTGGGGGTTGTTTGCATTAGATAACAAAATCTATGTAATGGGCCTAGCCTAGTTTCTGGGAATGGTAAGCTATGAATAAAAATGAGTTTCCCACCCCTAAAGGGTCAAACACAATGATTTCAAAGTACAATCTATGGATAGTTTCAACAATTTAAAATTGCTTTTTCAAATTAAGAGAGGGAACTCTGTGTTAGCTCCACCAGGCCCACTCTGACTGCTGACTGTTAGGAAGCATAGCTCTTGCCATTTGCAGGGCTGCCAGGCTGCCTCCGTCCCAGATGGTGAACGGGCACAGGCTGGCTCCAGTCCTCTGTCACTCTGCACAACTTCCTAGACTGCAGTTGTACTGCCTGATCAGTCCTCAGAAGCAAATATGAAGCAGCTGGTGTCCGGATTAGAAGGTGTAGGGCTATACATTTAAAATCAACAAGCAGGAAGAAGGCTCAGACTTGGGATGTAATATTCAGGCTTTTGTTCAAAGTGATGTTTGTCATTGCAAAGCATAAATTAAGATATCCTATTACTAAGTAAAATACTGATGTTACAATAATATTTATGTACTTGAGAAATTGTTTCATGTGTATTAACTTTTTAATTTTTATATGAAATGCTAATTTATATTCATGATTAAATGTTTTAAAAGTTTTTGTCACCTGTTTCTCATTTCATCTTGATTTTTCAGCCACTGTTTACCTATTGTCAAGCACTTTAGGTTTTACAGCTTGACTAATGCTTGTGGACAGATTCATGTATTTGCATTAGGAAGACAAAATTTAAATAATTAAGAAGTAGGTTTATAATTTAAAAATTAAAAATAATCTGAGAAATCTTATGGAAATTCCTCCAAAAATTAAAAATAGAACTGCCATATGATCCAGCAATTCCACTTCTGTGTATTTACCCCCCCAAAATTAAAAACACTAATTAGAAAAGGAATGTGCACTCCTTTGTCCACTGCTGTATTATTTACAATAGCCAAGATATTAAAAAAAAAACAACAAACAAACCTGTGTCCCTCAGTAGAATTGATAAAGAAGATATTGTGTGTGTGTGTGAATATATATAGTGTATATATATATATACACAATAGAATATAACCCAGCCACAAATGAAGAATGAAATCTTGCCATTGTGACAACATGGAGGGCATTATGCAAAGTGAAATAAGTCAGATAGAGAAAGATAAATACTGTTTGATTTCACTTATATGTGGAAACTAAAAAAACAAAACAAATGAGCAAGCATTACAAAACAACAGAGTCATAGATACAGACAACAAACAAGTGGTTGCCAGAGGGGAGAAGGGTGAAGGGAAGAAAGTAGGTGAGGGAGATTAAGAAGTACAAACTCCCAGTTGCAAAATAAATGAATCACAGGGATGAAATGTACAGTGTGGGGAATAGAGTCAACAACTATGAAAAAAAATCTTATATTTATAGCAAGACAGATCTCACTTATCCTTTCCCTGCTTCATAAGGCAACAAATTCCTATCATATCAATAAGATTATTTTGCTCAGGACATGAAGGCTATTTGTGGGCACTGTGATAAGCAGAAAATATTAAGGTTTGATTTGAGTAACTTAGTAAAAATTGTCACTTTTTGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCATGTCCGACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCTGACTCTTAGCGACCCCATGGACTGTAGCCTTCCAGGCTCCTCCATCCATGGGAGAACTTTCAAAAATATTATTTAATGTTCCTGAAACAATTATGTATTTTAACTAAGAGTATAACTTATAAAATATGTAATAGGTATCTACAGAACTCATCTGATCATAAAAGACCATCTACTATAAAAAGAATATTTCTCTGTTGATGCAGTTACATTATCTAAGTCATTAAGTGTTTCTGTTTTCACAAGCATGGCATATTTTGTTTTCCTCTGGTAGATCTTTCTAGGGTTAGGCGATTTAACAAACCCTTTATATTCAGAATAGTTTCATCCCTGTCACCTCTTAACTATCATGCTGTCTTTCCCTGTCTCCTGTTTTTCCTGGCTTGTCTTCCATCATGCAGTTCTGATACCAGATTTACAGAACACATGGGTGAATCATTCCTTTGACATACAG
Seq C2 exon
GTGTGGTGCAAAGACTTCTGCCGGGACCTTCTGTGGCTGTGACTTGGTGAACTGGCTCATTGAAGTTGGCCTCGCCTCTGACCGTGGGGAAGCTGTGATATACGGAGATAGACTGGTGCAAGGGGGAGTCATCCAGCATATCACCAATGAATATGAATTTCGGGATGAGTACTTGTTTTATAGATTTCTTCAGAAGAGTCCTAAACAGAGTCCTCCCACTATTAATGCGGACATTCCCCAGCAGGAAAGATACAAAGAAATTGAGCATTCATCCCCATCCCCTAAGACCTAAGTTACGAAGGAGACAAGCCCACATGGAGTCATACTTTAGCCTCAGATCTGTTACTTATTAGCTGTGGGACCTTTGGCAAATCACCACGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.268
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(8.7=12.8)
A:
NA
C2:
PF0061016=DEP=PD(89.9=63.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]