RnoINT0066973 @ rn6
Intron Retention
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60051546-60058515:-
Coord C1 exon
chr3:60058378-60058515
Coord A exon
chr3:60053812-60058377
Coord C2 exon
chr3:60051546-60053811
Length
4566 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
ATCATTCCTTTGACACACAGGTG
3' ss Score
6.38
Exon sequences
Seq C1 exon
GCTTGAATTCCTGTGGAACAATAAAGAAACAGCAGAAGACAGAGAATCCCCGGTTTCCGAGGAAATAAAAATGACCTGTCAACAGTTTGTACATTATCACCGTGACCTGTGCATCCGAAACATCGTCAGAGAAAGAAG
Seq A exon
GTAGAGCAATACAGGGTTCAGAGACATAGAGTCCAGATTACTAACATTAGGTTTTAATGAGCTAATAGTTGACGCTTGCACTTCCTGTCAGGCAGCTTCTGATCTCTGTACAAAACGTGAGCTGCAGAAGTGTGGGAGGATATTATTAGCATTCCCTACATGTTGGCCCTTAGTGCCTCTCACACAGCACTGACACACACCAGCTTGGAGAAGATTTCACAGTCTCATCCTCTAGTGCTCTGCTGTTTCTTATTACTAATGACGCTGTCAAGAGAATGAAATGGAATTTCTGTCTCTTAATTAATTTTATGATTTTTATTTCACCTCAAGTCCTAGTCATTATTTTTTGACATTATATTTATTCTTCTAATCCCCAAGGTACAGAATATGCTGCAGCAGGAAATGACGAACTGTGAATAATCAAATATTATGGTGTCGATGGTTTTAGATGTTATGAGAGAGGAAATAAAACTGAGAAAATATGAAGAACCTGACACCTTTATGTGTACTTATAAAAGCTTGGAGATTAGTATTGTACCACTCTGCTCAACATGCACACCATTACAATCGAAAGAATCCAGTGGGGGCGGGAGTGGGTGTGGGAGGGGCTGACTGAGTGTTAATATTCCAACTCCTGAGCTGGCACTTCTTGGCTGTGTGAGCCTTGGCAAATTAAGTCCTCAAAATCTCAGATTTCCTTTTCCTTGGGAGCTGGAGAGATGGCTCAGGAACTGGAAACCTTGTTCTTGTAGAGACCCAGCTTCTCAGTTCCCAGAACCCACAGGGAGGCTCACAACAGTCTGTAACTGTAGTTTCAGGGGATCTGGCTCCCTTATCTGGCCTCCTGGGCACCAGGCACACACATGGTGCACGTACGCAGATGCAGGCACAACACTCATGCACGTAGGATAATAATAAGTAAACCTCAGAGGAAAATCTTACTGTGGTGGCCTTCGATGCCCGCCAATGATAAACTCTGGAGAAAAGCCACTCTTCTACCTCGAAAGGCTGAGCACAATTTCAGGACCTATGGATAGATCTTTAATTTCTTTAGAGAAAATTCACATTATCTGTCAGGGCCCTACGCTTGCCAACTGTCAGGAAGCAGAACTCTTAGCATTCGCTGCCAGGTCCCAGGTGGCTGGATGGGTCCGGCTGGAGTAAAGCAGCTCTTCCCCGCTCCCATCCAGGTCCTGCAGCCCTCACTGTCACACTCTGACACTCTACAGAGAGCTGCCCATCGCAGCCATCAAATCTCGAGGTTGAAAAGGCCCAGACACAGACTCTGTCATTGATATTTTATGTATTTGAAAAGATTTCAACATCATTAACTTCTCTTTGAGTCTTATATGTGGAACTCTGTATTTATGGTAAAATGCTTTAGATTTTCCCCACACCTATTTGTCACTTCGTCTTGCTCCTCACGTCTGTTTCCTATTGTCAGGCACTTTAGACTTCACAGCTTGATGGACACCTGTGGAGAGTCTTGCTGTCTGGCGCACATTTGTATGAAAATGTTCGTAATTCATGTCATTGGCTTTTTGTTTTGCATATCTTTCTCTTCTGTATCTGCTCATACTCCAAATTAAACAATCAGGAAGCCTTAAATAAAAAAAAAATCAAAGCACAGGTCTTAAAGCAGATTGGTTTTATTTTTAGTGTGCATGCCCGTGGAGGTCAGAAGAGGGAGTCGATCCCCTGGAGCTGGAATTACAGGCAATTCTGAGCTTCGTGGTGTAGATGCCGAGAACTGAACTGGGTCCTCTGGAAGAGCATTGAGCACTCCTAACCACTGAGCCATCTTCCAGTCCCAGACCGTACTTTTAAAGTCTTGCGGTTTGTTGTAGGACGGACCTCACTTGTTTGTTCCCTGATTCCTATCAAAGCAAGTGGCTGTACTGGCTGTTGAAGGAAAGAGACTATTTGTGGGCACTATAATCTGAAAATGAAGCTTAATTTTGTTTTAATTTAATAAACTAGGTTAATAAAAGTAGGGTTTTTTATTCCATTCAAATAAATAGTCTCATTATGTAACCTGTCCTCAAGCTACTGCCTCGGCTTCTCAAGCGCTGGGAGTATAGGCATCACACACACACACACACACACACACACACACACACTCTCACACACACACTCACACACACTCACACACACACTCACACATACTCACACACTCACACACACTCACACACTCACACACACTCTCACACACTCACACACACTCACACACTCACACTCACACACACACACACTCACACACTCACACACACTCACACACACTCACACACTCACACACACACTCACACGCACACACACTCACACACACAACACTCACACACTCACACACACTCACACACACACACGCACACACACACACACCTCTAATAGTCATTTATACAATAGCTTTCTGTAAGACAGATAAAAGGCCTTATGGGGAGCTGTGGAGATTGCTCAGTACAGTGCCTGCTACATAAGCACAGACCTTGACTTGGGTCTATAAAGCCCACGTGAGAGCTGGACTAGTGGGCCATGGCTGTAACGTCAGTCCTGCTGAGAGAAAGGCCAGCCAGAGGAACCTCCGTGAGACTCAGTGAGACTCTGTCCTAATAAAGATGAAGAGCCATTGAGGAAAGACACCAACACTGACTCAGATCGCCACACATGTGTGCACACACACATACACAGAGGGGGGGCAGACAGACAGACGGACAGATAGATATTTCTGGGGGGTGGGGATAGAGAGTTGGCTCAGCACTAAGAGGGCTGGCTGCTCTTCCAGAGAATCCGGGTTTGATTTCCAACACCCACATGGCAACTCACATCCATCTGTTAACTCCAGTTTCTGGGGATCTGATGCCCTCTTCTGACCTTTGGTACTGAGTGCATACAGTGCCCACCAGACATAAATGCAGGCAAAGCTCCCATATGTGTATCCAATTAAAAAATAAATTAATTAAAACCATTGTAAAAGCAGCCTAGCCAAAGTTCTGTTATCTTGATCTATGCTAATAAATATAGTATCCATATGTCACACATAGCTGTTTAAATTCTTTTTTTTTTCTTTCTTTCTTTTTTTTTTTTTTCGGGGCTGGGGAGCTGTTTAAATTCTTGAAAATTAAACCAAGTTTAAAAAATAAAACTTCATGGGGGCTGGGGAGATGGTGCAGTCGATAAAGTACTTGCCTCACAAGCCCAAGGACCAGCCTTGGAATCCCCAGCTTTGGATCCACATAAAGGCTTGGCTTGCCTGTAATCCCAGCAGTAGGTAGACAGATGTCTGGAGGCATCCTCGAGCTAGGCTAGCTGAAATGGGTGAGCTCCAGGTTGAGTACAAGACCCTGCCTCAGTAAATAAAAGTGGGAAGAAATCAACTTCGCCCACTGTCTACTTCAGGTTTCCACATGTATGTGTATATACACGTACCCTACATACAATACATTTAAACATACATAAACACAGAGACACACACCATACACATATACATGTTGCGGGATACTGAGTCACATCGTGAGCCCCAAGACTATGTTATTTACTGAGAAAAGCTGTTTCTAGCTGTGGTGAGGCTCAGCCTTAGCACACACCTTTAATCCCTCTGGCTGGAACACAGACACGCCCTTAGTACACACCTTTAGTCTCAAACAACGAAGGTTTGTAGAAGTGATGTCTAATTGAGTGGCAGACACAGTGACGAATCAGAGAAAGAGTTGACAGAGTAGGATGTGCTCAACTCTCGAGAAGAAAGAAAAGAGAGGTTACTTAAGAGAGCAGCACAGAAAGGAAAGGAAAGGAAAGCAAGGAGTCAGTCTTCCTGCGAGAGTTGTACAGAGACAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCAGTTTAGAGAACAGGTGAAGACAGAATGAACCAGAGGATGAGAAAGGCTCCAGGAAGTCAGAACAGAGTGCTCGTTAGTTTCAGGACAAGCAGAGCAATTCAGCAGAAACTGAGAGAAGCCAGATTGAATCAGTCAGCTTGAAGAGGAGTTTGAGGCAGAACAGCCAAGTGGAACCAAGCAGTCAGAGATCAGAAAGAACAAGAAAGGATGAGCTTATTCAGAAGTAAGGCTCAGACAGTGAAAACATTCTAGGAGTAGATCAGATTTACGGAGGTTAGAAGCTTCCAGAACTAGAGCTAGGTGAAGCAGACTGAACTGAGGCAGTAAGCCAAGACAACAATTATATCAGGCAAACAAAAGTGACTTTTACATATACACACACGTGCTCCCCTCCAGGAAGAATATTTCTCGGCAGTACTTACCTGTGCGTTTTTAAAAGTCTTGTTCTCACAAGCACCACTGGCCTATTTTATTTTCACCAGAGGGTCTTTCTAGGGTCAGGCAAACCAAGAGATCCCTTGTATTTAGAGCAGCTCCGTTTCTGTCATACTCGTAACTGTCATACTGTCTTTCCTCATTTCCTTTTTATTTTTCTTTGCTCATCTTCCATCATGCAGTGCTGGTACCAGAATTACAGAGCATATGGCTGAATCATTCCTTTGACACACAG
Seq C2 exon
GTGTGGTGCAAAGACGTCTGCCGGGACCTTCTGTGGCTGTGACCTGGTGAACTGGCTCATCGAAGTCGGCCTAGCTTCTGACCGTGGCGAAGCTGTGATCTATGGAGACAGACTGGTGCAAGGGGGAGTCATCCAGCACATCACCAATGAATATGAGTTTCGGGACGAGTATTTGTTTTACAGATTTCTTCAAAAGAGTCCTGAACGGAGTCCTCCTGCCGGCACTGTAAGCAACCCCCCAGAAGAAAGCTATAAAGAAATTGGTCACGCGTCTCCGCCCTCACTCTCCCCTAAGACTTAAGATCCAGAGAGAGCCCCGCAGGACCACACCCTCTAGCCTCAAATCTGATCCTTTTAGCTGTGGGACCCTGGGCAGGTCATCTCTTCTGTAAAATGACAAAGGCAATCCTACCTTGTACTGACATCCCATAACTTTACGTGTCTATAGAGCACATAGGAAACTGACAAGAGATTTCACAAAGTTAAAGGTTATGATAATGAATACAGCAGTTGCTAAAGATACCACTGCTGTCCCAACATTTTAAAAATCATCTCTTTCTGAAACTGTTATCATTATAGAGTCAGTATCCAGCTGGCTGTGATTTTAAGTTGCCAAATGTGGCAGGTTTGCTGCTCTCAAAAGGAACCTTAGGACAACCTCACATTTATCAATAACACTTCCCCCCAACAGATTTTTACTTATTCTAGTAAAAGCTTTTATTTTCCTTCCCACTTCTTTGACAAATACTACCTATTCGAAAATTACAACTACTGTTCTGTTTTTGAGCCAAGGTCTCATGATGTAGCCCAGGCTGGCCTCAAATTCCTATGTAGCCAGGAATGGTTTTTAACTACTGATCTTCCTGCCTCTGCCTACTGAGTTCTGGACTTTTTGGTGTGTGCCAACATGCCCGGCTAACCCCAGTATTTTTTTAAAGTAATTTTTAAATTTATTTTTGATAAAACACCAGTTTTAAAGGTTTTTGTCTTTTCTTGTTTTCTATCTACATTACAAATGTGTACCAATAAGAAGAGAATAAGAACATTACTATCTCTATAATCTTTTAAGATAAAAATTTTAAATAATTTGAACTTATTCATTTAAATGTTATTTAAGAAATAATGCCAAGCAATGTACTGTTTCTGATAGAAGAAAAATCCACTTTATTCCCTGCATTGAGAAAGTATATAGTCAGGAACTTAAAATTCTAAGCCTAGCAACCTACCTTAGAATTTAGTCCTTTCTGTGTCCATGTCTAAAAAATTTGTAAGTTTAAAAATTAGTAAGTGTTGCTTAGTCCATTGAGATTTTAGGACAGAATGACAGGAACACAACTAGTTACTAAGCAACAGGGAGGCTTCCTTACAGATCTGGGGCTGGCAGTGCAAGGGTAAACAGCTGCACTCCACCTCTGCTGAGGCCCCTGCAGGTCCACCACCCTCGATGGGAGCTGCCCTCGGTGGGAGGGAAGGGCTCTGGAAGAACAAACCGCATGTTGGCACCTCTTCTCTCATGAGCCACACTTCTCCAGGTCACCTCCCTGGGGTTGGGTTTTGAAGAGACATGTCCAGACCATTACAGCCTCAGGTAAAGCTTTATTCTCAGAGAATTTGCACATCCTTTGAACAGCTACTTAATTATTAGATATCAGTGATGGTTTAACTTATTCTAAATGTTATTTATCTTATTTTAGTGTTTCATATATAAAAGCCATTTAGGAAATTATTTATAGGGTTAGTGCCCTGGCCCTTCTAATGTAGCAAATACATAATTAAAAGAAAACCTTGCATGGAAGCCTAGTGTATATAAAAAGAAATGATGTTTATTTTATGTTACAATCATGGAAGCGGGATGTTTTAGGTAGAACTATAGCACCATAAAACTTAGGGGAAAAAAGAGACACGCTCACACTGTACTCCTAGGGCCCAGGAGTACACATAAGCCCCCGCCTTAGCAGCCTCCAGTAGCAAGACAAAATTCACATGTATGCGGGCAACTCAAATTCAAGCGAGGGAATCTGTTCTGTTTATGAATAACCCATATTAACTATGCTCTTTCATTTGCACAAGTGGAATCTGAAACATCATTGTCTGTGGGAGGCTCTAAGAGAGAACCATAGATCAGAGTGACTCGCAGTTTCAGATGATAAAGGCGTTTAGCCATGCTCTTAGGAGTAAGGATAAGCTAATTTTATTAAAGGAAATGTTTGTATGTTACTTTCTCACTGACAGCACGTTTCTCAATAAAATACCTATTTTAACTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485:ENSRNOT00000025158:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(7.4=10.6)
A:
NA
C2:
PF0061016=DEP=PD(91.2=61.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]