GgaINT0049034 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18098045-18100680:+
Coord C1 exon
chr7:18098045-18098182
Coord A exon
chr7:18098183-18100244
Coord C2 exon
chr7:18100245-18100680
Length
2062 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATCATTCCTTTGACATACAGGTG
3' ss Score
7.04
Exon sequences
Seq C1 exon
GCTTGAATTCCTCTGGGGAGGGAGAGAAGCAGAAGGGCATGCAGATCCCACTCTACCTGAGGAAATCAGGATGACCTGCCAACAGTTTGTTCGTTATCACAGAGATCACTGTGTCAAAAGCATCGTCAAAGGCAGAAG
Seq A exon
GTAAGGTCTTCCCCCTTCACATTTAACCTGTTAACAAAGCTCATAGCTCACCTTTTGGAAATAATGAAATGCAATATAGTCATTCTGTGCGTGTTCTCCTATCTGTTCTCATGTATTTACTCAAACATTCAAGTGAAGATTAAGTATTTTGCAGTAACATGTAGAAAATATTCTTGTATAAGACTAAAACACTGAGGTACAAATTATCATGTTATCTCATCTAGGTTTGATGGTTTTGTAGCACCTCATTAAGACCTGTCCCCAGTTCTTGTATTTAGCAGAAGTTTAGGAACAAAATCTTTCTGAAGAAGTGTATGTGTCAATGCCTGTGATAGCCTGTGTGATGCTTCATTTTTGTCTTCTAATTAATAAGGTGTTGGTATTTATGGTAGAAAATGTTACTAATAGCTATTGTGGGAGACAAAACTATTACAACAGTGAGAGCAGAACATCTTTAGGACTTTACACTTTTTGAGTTCATACAATTTATTTTGCTGATTCCTCTCATGAAGCCTAAACCCCAAATTGTGAGATTGCCAAAGCTTGCAAACCCAAATTATGATACCTAGGTCAAAGGTTATGTATTTCATTATGTTCAGGTGGATGAGAAAAGAAATGCAGACAGAAGCATCAGGAGTAAGAAAAAGATACTTGCCTGCATTTATATATATACTATGTAAAGCAGAGAGATGAAGAGTTGTTTTAACAGGACACTTTTGCTTCTCTTGGCATGGAAGCTCTCTACTAGTTCTGCAGGGGGATATTCTGTCTATAGTCAGATAATCTGAAACCACGTTCCAGAATGTTCTTTGGCAGCTGTGTTCCCTAAGAAGTAAAAGCAGGAGACAACATTATTAATTTAGGAAAGAAATGAACTATGGTAGGGCAAGGACTTGCCATGCAGAAATGAAGTATCAGAAACTATTTTGAAATAAGGCAGGTTGTAAAGTTCTGTGTTTCCTGCACTTCTGCTGCTATTGCATTTCTTGGGTTTTGGGCTGTTTGGTTAGTTTTAGTGTTTTGTTAGGTTTGTTTTTAATTCTATATAATCTGAGAATACATCAAAATCTGACTTTAACTGCTTTATTGTTTTCATATTATGTTAATGCAGAACAAGTTTCATGTTTCTTTTTCCTCCTTGTGGGTTAAAATACAGCATTTTTGTTTATGTAACTTGATCCTCTCCTCATTGATTTAAGCATGCTATAACTGAGACCTTCTGATCATGGATTTTTATTTATGTTAGATCCTTTTTTCTCTTCTATGATATTACCTTGCTATCTGTTAGTGCTGCTTTTAACTTAGATTAAAAAGAAAAAGAAAGTTTAGTTTTTGCTATCCTGTACAATTGTTAATCATTTTCAGAAACCCTGTGCTTGGGTTCCATAGAGCAGATTTTAGATGAGCAGAAACATTCATTGCTGCAGGTAAATTTCAGAATGGTATTTTACAGCAACTAGGCTAGATGTTAGTGGAATTGCTTCATAAATGTATTACATAAGTTAGTAAATTAGTTTAGTCGTCTTCCATTTATTCGTAGTACCGCCTGCTGTAGAAAATATTTAACCAGATATTCAAGTTAAATGGTCTTTGTTTAGGATATATGTAAGCAATTGTTTTCAGCTTGAAGCCGCAGAGAAATTATACAGTGGTATTGAAGTGCAGATGGAGGTCCTGCTGCTGCAGGCTTGCTGCACTCAAATCATATTTTGTTGCAGAAATGGTCATGCTAATGAGTACATGGGAAGTAAGTATTCACTAAATAGGCTTGCACTGTGTGTGCTAGTAGGAAAACTGCTGTTTCTGTTTGTTGATATTTATGTACAGAGGCCTAAAATAACTTCAGATGTAAATTTTGCTTTTCATTGAAGTGTCTGTTGGAAAAGGTAGTGAACATTGGCATGTCCCTAATATGCAGAACTTGCAAATTCTCCTCTAACGTGCTCTTAACTATCATGATGTCTTTCCTTGTTTCCTGCTATTTTTCCTTGCCTTTCCCCATCGTGCAGTGGTGATACCAGATTTACAGAACATGTGGGTGAATCATTCCTTTGACATACAG
Seq C2 exon
GTGTGGTGCAAAGATCTCCACTGGCATCTTCTTTGGCTGTGACCTGGTGAACTGGCTCATCCAAGTTGGCCTCGCCTCTGACCGTGGTGAAGCTGTGATGTACGGAGACAGACTGATGAAAGGAGGTGTCATCCAGCACATTGCAAATGAATTTGAATTTCGGGATGAATATTTATATTACCGCTTTGTTCAAAAGAGAGCGACTACAGCTGAGAGCCAATGACCTGAGCATGTAGACAGAGGACAGGCAGGTAGGGGTAAATGTGACCGTCTCTTCTGGGTTTGCTGCTGAAACTGGAAGTGTTTCTTTCTCAGGGCTCCTGGAGGGTCATGTTACCTTCTCTTGTAAAGCTAAGAAATGTGATTCTACTTCTGTCTGTTCTGAAGCAAATGATAGTCATTCTCAATGAGCGTTAAACCAGAAGGCAACTAGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(7.4=10.6)
A:
NA
C2:
PF0061016=DEP=PD(91.2=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]