MmuINT0073091 @ mm10
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73341506-73348274:-
Coord C1 exon
chr2:73348137-73348274
Coord A exon
chr2:73343758-73348136
Coord C2 exon
chr2:73341506-73343757
Length
4379 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
ATCATTCCTTTGACATACAGGTG
3' ss Score
7.04
Exon sequences
Seq C1 exon
GCTTGAATTCCTGTGGAACAACAAAGAAGCAGCAGCAGACAGAGAATCCCCCGTTTCCGAGGAAATAAAAATGACCTGTCAACAGTTTGTGCATTATCACCGCGACCTGTGCATCCGAAACATCGTCAGAGAAAGGAG
Seq A exon
GTAAACTCAGTCCAGGGTTCAGAGACATAGATTCCAGATTCTGAAGATTAGGTTTTAATGAGCTAATAGTTGATCCTTGCCCTTGCTGTCAGGCAGCTTCTGATCTCTCTGTAACTTGTCGGCTGCGGAATTGTGGTAGGCGATTAACATTCTCTACATGTCGGCCATTAGCGTCTCCCACAAAGCACTGACAAACACCGGCTCCAGAAGAGATTTCTTATTCTCATCTCCTAGTGCTCTGCCACTTCTTATTACTAATGACGCTGTCAAGAGAATGAAATGAAATTTCTGCCTCTTAATTAAGTCTATGATTTTTATTTCACCTCAAGTCCTACTCATTATTTTTTGACATTATATTTATTCTTCTAATCCCCCAGGTACAGAATATGCTGCAGTAAGAAATGATGAACTATGAATAATCAAATATTACGGTGTCGATAGTTTTAGTTGTATTGAGAGAGGAAATAAAACTAAGAAAATATGAAGAACCTAACACCTTTGTGTGTATTTCTAAAAATTTGGAGATGAGTATTTGAGATGGTTCATTTTTAAGCGTGGTACCACATGGTACCACTGTGCTCAACATGCATGCCATCACAATCTCACGAATATAGCCTGGGGAAAGAAGGGGGGTTCACTGAGTGGTATACCATATTCCACACTTAATGACTATGTGAGCCTTGGCAAGTTCAGTCCTCAAAATCTCAGATTTCCTTTTCCTTGAAAATTCCTACCTCAGGGGCTAGAGAAATGGCTCAGCAACTGAAAGCCCTTGTTCTTGCCGAAAGCTGGCTTCTCAGTGCCCAGCCCCCACAGCGAGGTTCACAACAGTCTGCAAGTCCAGTTTCAGGGAATCCGACTCCCTTTTCTGGCTTCCTGGGCACCAGGCATACACGTGGTGCACATGCAAACACGGCAGGCCCAACACACATGCACATAAAATAACAATAAGTAAACCTTAGAGAAAAATCTTACTTTGGTGGCCTTTGATGTCTGTGATGAGCCTTGCCCAATGACCGACAATGATAAACTGAAGAAAAGCCACTTTTCTACCTTGAAAAGCTGAGCACGATTTCAGGATCTATGGATAGATCTTTAAATTTTTTTCAGAGAAACTTCACATTATCTGTCAGGATACTGTGCTTGCCAACTGTCAGGAAGCAGAACCCAGCCTTTGCTGAGCTCCCAGGTCCCAGATGGCTGGATGGGCCCCAGCTGCATTAAGGCGGCTCATCCCTGCTCCTGCCCAGGATCTGCCGCCTGCACTGTCACACTCACTGACACGTTGTACTGTTCCGTAGGCTCCTGTGAGGGCTGCCTAGTCACAGCAATCAAGGGCCAGATACCCTCGGCCAGTGCTGGGACAGGAGGTACTGCCTCGATGTTGAAAAGGCCCAGACACAGACGCTGCCATTGATAGCTCATGTATTTGAAAAGATTTCTATTCTACATCATTAACTTCTCTCTGATTCGTATATGTGGAACTTTGTATTTGTGGTAAAAATGCTTTAGATTTTTCCACACCTATTTGTCACCTCATCTTGTTTCTCACGCTCTTATTTCCTGTTGTCAGGCACTTTAGATTTCACAACTTGATTGACGCCTGTGGAGATTCTTGCTGTCTAGTGCACATTTGTATGGAAATGTTCATAATTCATGTCATTGGGTTTTTTGTTTTGCATATCTTTCTCCTCTGTATCTGCTCATACTCAAGGCAATCCAAATTTGCATTAGGAAGACAAATCGTAAACAATCGGGAAGCTTTAAATAAAAACCAAAGCACATTTTCTTAAAGCAGATTGGTTTTTATTATTAGTGTGCTTGCCTGTGGAGGTGAGACGAGGGTGTCAGAAGGCCCTGGAGCTGGAGCTACAGGCACTTCTGAGCTGCATGGTACAGATGCTGAGAACTGAACTGGGGTCCTCTGGAAGAGCACTGAGCACTCCTAGCCGCCCAGCCATCTCTCCAGGCCCAAAGTGTACTTTGAAAATCTTGGGTTTGCTCTCACCAACCTCACTTGTTTGCTCCCTGATTCCTACTGAGGCAAGTGGCTGTACTGGCTGCTGAGGGGAAGAGACGATTCGTGGGTACTATAGCTGAAATTAAAGCTTAATTTTGTTTTAATTTAATAAACTAGGTTAATAAAAATAGTGTTTTCCTCCTTTGAGATAGAGTCTCATTATTTAACCTATGGTCAAACCTGATTCTGCTGCCTCAGCCTCTCAAGTGCTAGGATTATAGAAATGTAACACACACACACTCATGCACACACACACACACACACACACACACACACACACACACACACATCTCTAATAGTCATTTAGATGGTAGCTCTCTGGAAAACAGATAAAGGCCTTCTGGGGAGCTGCAGAGATTGCTCAGTTAAGTGCCTTCTACATAAGCACAGGAACTTGACCTGGGCCTTTAAACCCCACGTGGAAGCTGGACTAGTGGCTCCTGCCTGTAACCCCAGGCCGGTGGAGAGAAAGCCTAGCCAGAGGAGCCTCTGTCCCAGGGAAGAGAGAGAGCAATTGAGGAAAACACCAGCACTGAGCTCAGATCTCCACACACATGTGCACACATGATGTGCATATGCATACACACACACACACACACACACACACACACGGCATGCTACTATTAAAAGATACTTCTGGGGGTTAGGGGATGGGCTCAGCAGTAAGAGCACTGGCTGCTCTTCCAGAGGCTCTGGGTTTGATTTCCAACACCCACATTGCATCTCACAACCATCTGTTACCTCCAGTGCCGAGGAATCTGACGGCCTCTTCTAGTCTTTGGTGCTGCATGCATGTGGTGCTCACCAGACATAAATGCAGGCAAGACTCCCACATGTGTATCCACTAAAAAATAAATTAATTAATTAAAACCATTGTAAAAAGCGGCCTAGCCAGAGTTCTATTATCTTAATCTATGCTAATTAATATAGTATCCTTATGTCACACATAGCTGTTTAAATTCTTGAAAATTAAACCAAGTTTAAAAGTAAAACTTCTTGGGGGCTGGGTAGATGGCTCGGTAGATAAAGTACTCACCCCACAAGCCTGAGGACTGGCTTTGGAGTCCCCAGGATCCACATAAAAGCTGGGCAGGTATGGTGGCTTGCCTGTAGAGCCAGCAGGAGGTAGACAGATGTCTGGGGGCCATCTGGTGAGCTAGGCTAGTTAGGCTGGTTAGGCTGGTTAGGCTAGCTAGATTGGGTGAGTTCCAGGTTCAGTAAGAGACCCTGCCTCAATAAATAAAGTGGGAAGAAATCAAAGTCACCCACTGTCTACTTTAGGTTCCCACATGTATGGGTACATACACGTACCCCACATACAATACACTTAAACGTGCACAAACACAGGGATGCACACCACACACATATACATGTTGCAGGATACTGAATCACATTGTGAGCCCCAAGATTCTGTTATTTACTGAAAAAAAGCTATTTCTAGTTGTGGTATGGCTCAGCCTTAGCACACACCTTTAATCCCTCTGGCTGGAATACAGACACGCCCTTAGTACACACCTTTAGTCCCAAACAATGAAGGTAAAGTTGGCTTGTAGAAATGATGTCTAATTGAGTGGCTGACAAAGTGATGAATCAGAGAAAGAACTGTTAGAATAGGATATGCCCAACTATCTCAAGGAGAGAGAGAAAAGGGAGGCTACTTAAGAGAGTGGGACACAGAAAGAAAAGGAAAGTGGGAGTCAGGTTTACCGGGAGAGCTGTGCAGAGAAAGAGAACAAGCTAGACACAGGTGAAGACAGAACGAAGCAGAGAAGGAGAAGGAGCCAGAAGATCAGCACAGATTGCTAGCGTTCGATCGAGGCCAAGCAGAACAATTCAGCAGAAAGTTAAAGACGCCAGATTGAATCCGTCAGCTAGGAGAGGAGATAGAGTCAGAACAGTTGAGTTGAACCAGGCAGTCAGAGATCTGAAAGAACAAGGAAGAATGAGCTTCCTCAGCAGTAAGTCTGATTAAGGTGGTTAGAAAGCTTCCAGGGCGAGGCTAGATTAGCAGACTGAGGCAGGAAGCCAAGACAACAATCCCATCAGGCAAACCAAAGTTACTTTTACCTATACGCATGCGCTCCCCTCCAGGAAGACAATCCTCAGGCAGTCAGTACACTTACCTCTGTTACTTTTAAAAGTGTTTCCACAAGCAGTACTATTTTCACCAGAGGGACTTCCTAGGGTCAGGCAAGCCAACAGATGCTTCGTGTTTAGAACAGCTCCATTTCTGTCACGCTCTTAACTATCCCACTGTCATCCCTCATTTCCTTCTTATTTTTCTTTGCTCATCTTCTGTCATGCAGTGCTGATGCCAGAATTACAGAGCATATGGCTGAATCATTCCTTTGACATACAG
Seq C2 exon
GTGTGGTGCCAAGACTTCTGCCGGGACCTTCTGTGGCTGTGACCTGGTGAACTGGCTCATCGAAGTCGGCCTTGCTTCTGACCGCGGCGAAGCTGTGATCTACGGAGACAGACTGGTGCAAGGGGGGGTCATCCAACACATCACCAATGAATACGAGTTCCGGGACGAGTATCTCTTTTACCGATTCCTTCAGAAGAGTCCTGAGCAGAGTCCTCCTGCCCGTACTCTAAGAGACCACCAGGAGGAAAGCTATAAAGAAATCGGTCACTCATCTCCACCCTCAGTCTCCCCTAAGACTTAAGTGCCAGAGAGAGCCCCACAGGAATCATACCCTCTAGCCTCCTATCTGATCCTTTTAGCTGGGTGACCTTGGGCAGGTCATCTCTTCTGTAAAATGACAAAAGGCATTCCTACTCTGTACTGACATGCTATAACTTTATGTGTATATAAAGCACATAGGAAACTGACAAGAGAAACCATGAGGTTAAAAGGTATGATAACGAATACAATAGTTGCTATAGAGAACCACTATTGTCACAATATTTTAAAATCATTTCTTTCTGAAACTGTTCATTATAATTACAAGGTCAGCATCCAACTGGCTGTAATTTTAAATTGCCAAACTTGGCAGGTTTGCTGCTCTCAAAATGAACTTTAAGACAACATTACATTTATCAATAACACCTCCCCAACAGATTTTACTTATTCTAGTAAAAGGTTTTATTTTCCTTCCCACTTCTTTAATACATACTACCCATTCAAAAATTACAACTACTGTTTTGTTTTTGAGACAAGGTCTCATGTAGCCCAGGCTGGCCTATGTAGCCAAGGATGGCTTTTAACTCCTGATCTTCCTGCCTCTGCCTCCTGAGTTCTGGGCTCATTGGTATGTGCCAACATGCCTGGCTAATCCCAGTATTTTTTTAAAGTAATTTTTAAATTTATTTTTGATAAAACACCAATTTTAAAGGTTTGTCTTGTCTTCTATCTAAACTACTAATGTGTACCAATACCAAGAGAATAAGAACATTAATATTATTATGTCTGTAATCTTTCAAGTTAACATTTTAAGTAATTTGAACATATTCATTTAAATGTTATATAAGAAATAATGCCATGAGATGTACTGTTTCTGGTAGTTTCAAAGTATATTGTAGAAGAAAAATCTACTTTGTTCCCTGCATTGAGAAAGTATATAGTCAGGAACTTGAAATTCTAAACCTAGCATCCTACCTTTAGATTTTAGTCTTTTTTGGGTCCATGTCTAAAAAATTTGTAAGTTTAAAAATGAGTAACTGTTGCCTAGTTCACTAAGATTTTAAAACAAAATGACATGAGCACAGATAGCTCCTAAGCACCAGGAAGGCTGTCTTACAGGTCTGCAGGCTGGCAGTGTAAGAGTAGGCAGCTGAGCACTCGGACTCTGGCAAGGCCCCATTTCAGGTCCACCGATGGAGCCGCCATGGTGGGAGGGGAGGCTCTGGAAGAGCAAAACGCATGCTGAACCTCTTCTCTCATGAGCCACACTTCTCCAGGCTACCTCACTGGGGCAGGGTTTTGAAGAGACAGGTCCAGACCATAGCAGCCTCAGGTAAAGCTTTACTCTCTGATAATTTGCACATCCTTTGAACAGCTATTTAATTATTTGCTATCAGCGATAGTTTAACCTATTTTAAATGTTATTTATCTTATTTTAGTGTTTGATATATAAAAGCCATTTAGGAAATTATTTATGGGGTTAGTGCCCTGACCCCTTTAATGTAGCAAATACATATCAAAATGAAACCTTGCATGGAAGCCTAGTGTCTATAAAAAGAAATGATGTTTATTTTCTGTTGTGATCATGGAATTGGGATGTTTTAGGCAGAACTATATCGCCATAAAACTTAGGGGGAAAAAAGAGACATGTCCACACTGTACTTCTAATGCCCAGGGGTACGAGTAAGCCTCAGCAGCCTGAGTGACAAGACAGAATTCACACATATTCGGGCAACTCAAATTCAGGTGAGGGCATTTGTTTTGTTTATGAGTAGCCATATTAACGATGCTCTTTCATTTGCACAAATGGAATCTGAAACATTATTGTCCATGGGAGACTCTAAAAGAAAACCATAGGTCAGAGTGACTTGCAGTTTCAGATGATAGAGGTTTTTTAGGATTAAGGATAAGCTAATTTTATTAAATGAAAATATTTCTATGTTACTTTCTCACTGACAGCATGTTTCTCAATAAAATACCTATTTTAACTTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762:ENSMUST00000076463:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0061016=DEP=PU(7.4=10.6)
A:
NA
C2:
PF0061016=DEP=PD(91.2=61.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types