BtaINT0068639 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017124 | GPSM2
Description
Bos taurus G-protein signaling modulator 2 (GPSM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192355]
Coordinates
chr3:34554348-34556297:-
Coord C1 exon
chr3:34556227-34556297
Coord A exon
chr3:34554525-34556226
Coord C2 exon
chr3:34554348-34554524
Length
1702 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAC
5' ss Score
1.86
3' ss Seq
TTCCATTTATAATTCTGTAGGTA
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTGCACGCCCCAAGTTTGGACGCCGACACAGTATGGAAAACATGGAGCTTATGAAGTTAACACCAGAAAAG
Seq A exon
GTTGACAGTTTTTCTCTTTTAAATTTCTTGAACTGTTAAAATATTTCAGCAACTTTTAATTTAAATGAAATAATTTAAGTCCTGTCATATGGATAACACTTGAACATTTTCCTTTGAAAAGAATCAAGTACAGTGCAAAAACAATGTGTACAGTATGGTGCCATCTGTTCAAGAGAACTTTTATGCATATATATCCTTTGTAATTGCATGGCAGCAGAAGGGTATGTAAGATACTTGACAACTTGATTACCTCTGGGAAAACTGCTGTCTGGGTTATAAGAAATGCTTACTTAATATACTGTTTTGAAGTGTTTGAATATTTTACCATGTACATGCACTACTTTGTTTTTCTTTAATTAAAAGAAGATCAGGGAAATTAAAAAAAGGATTGAGAAACTTTTTCAACTAAATATCAGCAACATTATTGGCAAGATTAATGATACTTATGATCAAGCTAGTTTTTCTGGCTGCACTTTTGAAAAGCTTTTTTAAACAAAGCAATAACTCTTTATTCAAGATGCATCTTCTCTAGGATTTTGTTGGTTTTTTAAGTAACAGAGAAGGGACTTAATTGGGAAAAAGGTTACTGAAGAATAAATCTAGGCTGCTTTCTTCCACCTCCATTTATCTTAAATACACTGCTATGGTTTGCTCTTATTTGTTTATGCTGTATTGATATTTCTTAAAACACTTTTTATAAGATATATTATAATAACTTGGGAAACTTCCAATGTGCAAATTAAAATTATCAATAATCACACCTTCCAAAAGGAAAATTAATATTTTTGTATTTGTTCTTCTTGCATTTTATATGAATATTAAGATACTATTTTATAATACAGTACTATATCAACATCTTAGTGTCATTAAATATTCTTCTGCTCTATTTTTATAATAGGCATATGATTTTTGAATATTGACATGTTTTGTGTAAGTAGTCATCATGAGACCAACATCTGATTTGAACTAATTTCCAATATATATTTTTAATTACAAACTTTTTTTTTTTTTTAACTTCTGGTTAACTTCTGAAGGGCTTTGTGATTTTCTCCAAATATTTACCTCTTATATTGTGAGTGTGGTTTGCAAATCTTTAAATCTATAGAGTATTTAAAAAAAAATAGAAAAACTTTTAAGTCAGTTTAGATCTTCCTTCTTCTAGTAGGTAGGAACCTAGTAATAAGCAGCAAAATTAATTTGGTGCATCTGTAAGTGGTACTAACAGTAATTCCATGAGAAGCTGATCACATTCAACCCTGTAATTTTCCAATAGACAAATGATGATAAGGCTTTATCTCTAAGTTGTGATTTTTTTTTTTACCTCATAATAAAGTCAAAGAGTTCAGTAGTTTTATCAACAAAAAATTACTACTGCTTTGTAAGTTTTAGATGTCAATTTTTAAGGTTAAAAATTCTAGATATTCAAACTTTCCAATTGTAATTGATTTTCAGGTAACTCACATTGAGAATAAAACTTCAGCTTCTCTGACCATCCAAATTTTATTTTTATGACTTTTGGCAAACTTATTAAGATTTCTAAAAACCTCCACTTTAATATTTTGATAATAAGAAATTCATAGCATACATTTGGTCCAAGCTTTTGAAAACAGTGAGATATATTGTCAAAAAGAAATGTATTAACTCACCCTGCTCCCAGTTACTGTTTTTTTTAATGTCCTGTTTTCCATTTATAATTCTGTAG
Seq C2 exon
GTACAAAACTGGAACAGTGAAATTCTTGCTAAACAAAAGCCTCTTATTGCCAAACCTTCTGCAAAGCTCCTCTTTGTCAACAGACTGAAGGGGAAAAAATACAAAACTAATTCCTCCACTAAAGTTCTCCAAGACACTAGTAATTCCATTGATCACCGAATTCCAAATTCTCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017124:ENSBTAT00000022762:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACGCCCCAAGTTTG
R:
TTTGGAATTCGGTGATCAATGGA
Band lengths:
238-1940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]