HsaINT0071939 @ hg38
Intron Retention
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr1:108914338-108918789:+
Coord C1 exon
chr1:108914338-108914408
Coord A exon
chr1:108914409-108918612
Coord C2 exon
chr1:108918613-108918789
Length
4204 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTCCATTTATAATTTTGTAGGTA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GTGTACGCCCCAAGTTGGGACGCCGGCATAGTATGGAAAATATGGAACTTATGAAGTTAACACCAGAAAAG
Seq A exon
GTGGGTGGCAGGTTTTATGTTTTAAATTTCATGAACTATTATAAAATGTTTTAGTAATTTTTAATTTAATGAAATAATTTAAATAAGGCTTGCCCTATATAGGTATCACTTTAAAATTTGCCTGTAAAAAAAAAGTCAGAAAAAGTATAGTGCAAAAAGAATGAGTACCGTATGCTGCCATCTGTTTAAGAAAAATACATGCATATATTTCCTTTGTAGATTCCTAAAACATTCTGGAATAAGATATAAGAAACGGGCTAACAATGATTTCTTCTGGGAAGAGGACTGAGTGTCTGGGTTAGGCTAGAAATACTTTATATACCAGTTTGAACTGTTTGAATCATTTACTATGCAAATGTATTACTTTTAATTAATAGAAGATCAGGAAGATCAAAAGGACAAGCTTTTTTCCCCAACTACATAGCAACATTATTGCCAAGATAAATGAAATTTATGATCAAGAGGAGAGTTGTTTTTCTGGCTGCATTCTTGAAAAGCATTTTTTTTTAACAAGTACTTTGTATTGAAGATACATCTTCCCTAGGCTTTTTCTTGCAGGAGAGGGGTGCACAGTAAAAGGGAAGGGACTTCATAATTAGAAACAGGTTATTGAAGAAAACATCAAGGCTACTTTTTTCCGTTTCCTTTGAACTGAATAATTACATTGTCAAAATAGGCTCTCGGCCGGGCACGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTTTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGTCCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGTACTCCAGCCTGGCAACAGAGCGAGACTTGTCTCAAAAAAAAAAAAAAAAAAATAGGTTCTCATTCTTTTATGTATATTTTTATTTCTTTTTTTTCTTTTTTGTTTTTTTTGAGACGGAGTCTCGCTCTTTGGCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCACCCTCCACCTCCCAGGTTCATGCGATTCTCCTGCCTCAGCCTCCCGGGTAGCTGGGACTGCAGGCGGGCACCACCACACCCAGCTAATGTTTGTATTTTTAGTAAAGACAGGGTTTCACCGTGTTGGCCACGATGGTCTCGATCTCCTGACCTCGTGTTCCGCCCACCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCTCCTGGCCTTTCTTTATTTTACTTATTTTATTTAGCCACTGTGGTATATTTTTAAAAATGCTTTTATAAAATACCTTCATTACAGCAACTTTAGAAAATCTGAACACAGAAATCAAGATAATCAGTAATTCTGCCTCCTGATGGTAACTGCAGTTATTTTGGCATCTATTCATCTGGCATTTTCATATGGATATTATAGACACTATTTTCTAATATGTGGTGATCTATCAAGAACATCTTTCCAGCTGGACGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACTTGAACCCCAGAGTTTGAGACCAGCCTGGGCAACATGGCAAAAACCTGTCTATACAAAAAAAAAAAAAAAAGATAGAAAAATTAGCTGGGCCTGGTGTCACATGCCATGCCTGTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGTATCGTTTGAGCCTGGGATGCAGAGGTTGCAATAAGCCATGATTGTGGCACTGCACTCTAGCCTGGGTGACAGAGTGAGACCCTGTCTCTGAAAAAAAAAAAAGAAAAAGGAACATCTTTCCATGTCATTAAATATTCTTCTGCCCTATCATTATAACAATAACATATGATTTTTCAATAGTGATAGTTTATGTGTGAATAGTCTTCAAAAAACCAAAATCTAATTGTGTGAGAATCATATCCAAAATATTTTTATTCCAGCCATTCACAGAGTTATTTGGAAACTCTAGTAATTTTTAAAGGACTTTGTGATTTTCCCAAATGTCCAGCTCTTCTCTGTGAGTGGTTCTCAAATATAAATTTGTTAAATCCACAAATTATTTTTAAAAGCTTTTAAAAAGGCCATTTTTGTCTACTTTCTTCTTTTAGGAACATACTAATAAGTAGCAAAATTAATTTGCTTTCTTCTGCCTACCTATGTAGTGGTACTAACAGTGTTATGTAAGAAGCTGACCAGATTCAACCTTGTAATTCTCCAAGAGCCAAGTGATAAAATTCTATCCTTAATGTAAAATATGTTTAAGTGTAATTAGTTCTTTGTATTGGTTTCTTTTCCTCATAATAAAGCTGTCAAAGAATTCATTATTTCATTATTCTCAACATAGTAAAGAAGCATACATAAGGAAAAAGGGAGACTTCTAGGTTAAGAGGCTTCCTGGGAGAGTGTGCAGTGGGAGGGAACTTTTGAGACTTGGATGCCTGAACTTGGATATGTGAAAATGTCTTTACTAACCTCACATTTGATAATTTTGCTGACTTTAGAATTCTTGGTTAGAAATAATTTTTCTTCACAGTTTTTAAGACATTGCTTCGCCCTGTATTCTTGTTTTCAGTATTGTTGAGAAGTTCAAATAAATATATAAGGAACATTTTTAATTTTTCTTCTTGGGTTTTGGGTGCAGTTTTATGTTCTCACATCAAGGACCATTTTCCTTTTCTCTAAACAATAGACCACGAAATCCACTGTAGTAAATAATTTCCCCTTATAACCTGTATGTGAAAAGGAATCGATGGCTTGGTTCACTTACTAGCTACATGTTTTAAAAACAGCAACAAGGCCGGGCGCAGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGTGGGCACCTGTAGTCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCATTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGCAACAGAGTGAGACTCCGTCTCAAAAAAATTTAAAAAAAGCAACAAATGTATACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATGAGTTCTCACTATGTTGTCCAGGCTCAAGCAATCCTCAAATTCCTGGGCTCAAGCAATCCTTGTGCCTCAGCCTCCTGAGTAGCTGGGATTACAAGTGTGAGCCACCATCCCTAGCTACATGTCTCACTCCCCTGTACATTTATTTCAATTTGTGTCTCATGGGGCACTTTTCTGGATTGGTGGAAATGTTCTTTGTATTGATTGGAGTAGGGTTTATATGGCTTCCAATCATAGACTTAAAATCTGTGCATTTGACTGTAATTTTACCTACGAAAAAATGTGTGTCACTAAAATTATTACATAGCATGAACCTTTAGACTTACTTGTAAACATTTAAGACTGAATGTTAAAGCTGCAAATGTCAGAGCTATTGTATGTAGTGCATATTTTTCCACTGTACTCAATAAATGTTATTTTGTTATTTGTAGGCTGTCATGTATTTAAACCAGATCTAGACCTTTATAAATTGGTTTCGCCTATTGAGAATTTAGTATGGTATTAGTAAAAACAGTACCGTTTTATTTTTTAAAATTACTATGTTTTATATATTAATTTTTATGTTTAAAAATTCTACATACATCCAAAAATTCCAGTTGTAACAGATTTTTAAGTAACTCACGTCTAGAGTAAAACTTTGGCTCCTTCTCTGACCATTCATATTTTATTTTTACAGAGTTTTGGTAAACCTTGCTTTCTTATTCGTAGGTTCTTAAAAACCAGCATTTTAATGTTTTGATAATGAGAATCCACAGTATGCATTTGGTACAAGTCTTGAAAATAGTGCAATATACTAAAAAGGATATTTTTAAAGAGATCTAAAATTCTTCCTCTCTCCCCCAATAGTAAATAAGTGAGTACGTCAGGTTAATATTATGGGAAACCAGAAGAGAGCTGGGGATTTGGGGGTGTTTATTCACCTGCCTTCCATTTATAATTTTGTAG
Seq C2 exon
GTACAGAACTGGAACAGTGAAATTCTTGCTAAGCAAAAACCTCTTATTGCCAAACCTTCTGCAAAGCTACTCTTTGTCAACAGACTGAAGGGGAAAAAATACAAAACGAATTCCTCCACTAAAGTTCTCCAAGATGCCAGTAATTCTATTGACCACCGAATTCCAAATTCTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957:ENST00000406462:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development