DreINT0074564 @ danRer10
Intron Retention
Gene
ENSDARG00000017311 | gpsm2
Description
G-protein signaling modulator 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1169]
Coordinates
chr2:45640555-45640992:-
Coord C1 exon
chr2:45640910-45640992
Coord A exon
chr2:45640729-45640909
Coord C2 exon
chr2:45640555-45640728
Length
181 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATTTAATTTCTATCCTGCAGGGT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GAGCCAGACCCAGGATGAGCCGACGACACAGTATGGAGAACCTTGAGCTGCTGAAACTCACTCCTGACAAGATCAACGCCAAT
Seq A exon
GTGAGTATAGCTAAACGTTGAGCTCCAATCTGCCTTCTACTCTTAAATCTGTAATATGTTTAACTGTATGCATCAGTAGCTGTGTTTATATTCGTCATTTTTATAAGACTGGGAGGAAAAAGACATTAATGTGCTTAGTGTATGAAGAATTGCAAAACATAATTTAATTTCTATCCTGCAG
Seq C2 exon
GGTCAGAAGTGGACCAGTGACATCCTCTTCAAGCAGTCCAAATCCTCACTAGCCAAGTCATCTTCAAAGCTATCTTTTGTGAATCGTTTCCGAGGAAAGAAGCACAAACTGCAGAGCAGCTCCAGTAAAATCCTGCAGGATACCAGCAACACACGGGACGCTCCTCAAAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017311:ENSDART00000024034:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.721 A=NA C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCCGACGACACAGTATG
R:
TTTGCTTTGAGGAGCGTCCC
Band lengths:
243-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]