HsaINT0071939 @ hg19
Intron Retention
Gene
ENSG00000121957 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:29501]
Coordinates
chr1:109456960-109461411:+
Coord C1 exon
chr1:109456960-109457030
Coord A exon
chr1:109457031-109461234
Coord C2 exon
chr1:109461235-109461411
Length
4204 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTCCATTTATAATTTTGTAGGTA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GTGTACGCCCCAAGTTGGGACGCCGGCATAGTATGGAAAATATGGAACTTATGAAGTTAACACCAGAAAAG
Seq A exon
GTGGGTGGCAGGTTTTATGTTTTAAATTTCATGAACTATTATAAAATGTTTTAGTAATTTTTAATTTAATGAAATAATTTAAATAAGGCTTGCCCTATATAGGTATCACTTTAAAATTTGCCTGTAAAAAAAAAGTCAGAAAAAGTATAGTGCAAAAAGAATGAGTACCGTATGCTGCCATCTGTTTAAGAAAAATACATGCATATATTTCCTTTGTAGATTCCTAAAACATTCTGGAATAAGATATAAGAAACGGGCTAACAATGATTTCTTCTGGGAAGAGGACTGAGTGTCTGGGTTAGGCTAGAAATACTTTATATACCAGTTTGAACTGTTTGAATCATTTACTATGCAAATGTATTACTTTTAATTAATAGAAGATCAGGAAGATCAAAAGGACAAGCTTTTTTCCCCAACTACATAGCAACATTATTGCCAAGATAAATGAAATTTATGATCAAGAGGAGAGTTGTTTTTCTGGCTGCATTCTTGAAAAGCATTTTTTTTTAACAAGTACTTTGTATTGAAGATACATCTTCCCTAGGCTTTTTCTTGCAGGAGAGGGGTGCACAGTAAAAGGGAAGGGACTTCATAATTAGAAACAGGTTATTGAAGAAAACATCAAGGCTACTTTTTTCCGTTTCCTTTGAACTGAATAATTACATTGTCAAAATAGGCTCTCGGCCGGGCACGGTGGCTCGCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCTGTCTTTACTAAAAATACAAAAATTAGCTGGGTGTGGTGGTGTCCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGTACTCCAGCCTGGCAACAGAGCGAGACTTGTCTCAAAAAAAAAAAAAAAAAAATAGGTTCTCATTCTTTTATGTATATTTTTATTTCTTTTTTTTCTTTTTTGTTTTTTTTGAGACGGAGTCTCGCTCTTTGGCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCACCCTCCACCTCCCAGGTTCATGCGATTCTCCTGCCTCAGCCTCCCGGGTAGCTGGGACTGCAGGCGGGCACCACCACACCCAGCTAATGTTTGTATTTTTAGTAAAGACAGGGTTTCACCGTGTTGGCCACGATGGTCTCGATCTCCTGACCTCGTGTTCCGCCCACCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCTCCTGGCCTTTCTTTATTTTACTTATTTTATTTAGCCACTGTGGTATATTTTTAAAAATGCTTTTATAAAATACCTTCATTACAGCAACTTTAGAAAATCTGAACACAGAAATCAAGATAATCAGTAATTCTGCCTCCTGATGGTAACTGCAGTTATTTTGGCATCTATTCATCTGGCATTTTCATATGGATATTATAGACACTATTTTCTAATATGTGGTGATCTATCAAGAACATCTTTCCAGCTGGACGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACTTGAACCCCAGAGTTTGAGACCAGCCTGGGCAACATGGCAAAAACCTGTCTATACAAAAAAAAAAAAAAAAGATAGAAAAATTAGCTGGGCCTGGTGTCACATGCCATGCCTGTAGTCCCAGCTACCTGGGAGGCTGAGGCAGGAGTATCGTTTGAGCCTGGGATGCAGAGGTTGCAATAAGCCATGATTGTGGCACTGCACTCTAGCCTGGGTGACAGAGTGAGACCCTGTCTCTGAAAAAAAAAAAAGAAAAAGGAACATCTTTCCATGTCATTAAATATTCTTCTGCCCTATCATTATAACAATAACATATGATTTTTCAATAGTGATAGTTTATGTGTGAATAGTCTTCAAAAAACCAAAATCTAATTGTGTGAGAATCATATCCAAAATATTTTTATTCCAGCCATTCACAGAGTTATTTGGAAACTCTAGTAATTTTTAAAGGACTTTGTGATTTTCCCAAATGTCCAGCTCTTCTCTGTGAGTGGTTCTCAAATATAAATTTGTTAAATCCACAAATTATTTTTAAAAGCTTTTAAAAAGGCCATTTTTGTCTACTTTCTTCTTTTAGGAACATACTAATAAGTAGCAAAATTAATTTGCTTTCTTCTGCCTACCTATGTAGTGGTACTAACAGTGTTATGTAAGAAGCTGACCAGATTCAACCTTGTAATTCTCCAAGAGCCAAGTGATAAAATTCTATCCTTAATGTAAAATATGTTTAAGTGTAATTAGTTCTTTGTATTGGTTTCTTTTCCTCATAATAAAGCTGTCAAAGAATTCATTATTTCATTATTCTCAACATAGTAAAGAAGCATACATAAGGAAAAAGGGAGACTTCTAGGTTAAGAGGCTTCCTGGGAGAGTGTGCAGTGGGAGGGAACTTTTGAGACTTGGATGCCTGAACTTGGATATGTGAAAATGTCTTTACTAACCTCACATTTGATAATTTTGCTGACTTTAGAATTCTTGGTTAGAAATAATTTTTCTTCACAGTTTTTAAGACATTGCTTCGCCCTGTATTCTTGTTTTCAGTATTGTTGAGAAGTTCAAATAAATATATAAGGAACATTTTTAATTTTTCTTCTTGGGTTTTGGGTGCAGTTTTATGTTCTCACATCAAGGACCATTTTCCTTTTCTCTAAACAATAGACCACGAAATCCACTGTAGTAAATAATTTCCCCTTATAACCTGTATGTGAAAAGGAATCGATGGCTTGGTTCACTTACTAGCTACATGTTTTAAAAACAGCAACAAGGCCGGGCGCAGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGTGGGCACCTGTAGTCTCAGCTACTCAGGAGGCTGAGGCAGGAGAATCATTTGAACCTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGCAACAGAGTGAGACTCCGTCTCAAAAAAATTTAAAAAAAGCAACAAATGTATACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATGAGTTCTCACTATGTTGTCCAGGCTCAAGCAATCCTCAAATTCCTGGGCTCAAGCAATCCTTGTGCCTCAGCCTCCTGAGTAGCTGGGATTACAAGTGTGAGCCACCATCCCTAGCTACATGTCTCACTCCCCTGTACATTTATTTCAATTTGTGTCTCATGGGGCACTTTTCTGGATTGGTGGAAATGTTCTTTGTATTGATTGGAGTAGGGTTTATATGGCTTCCAATCATAGACTTAAAATCTGTGCATTTGACTGTAATTTTACCTACGAAAAAATGTGTGTCACTAAAATTATTACATAGCATGAACCTTTAGACTTACTTGTAAACATTTAAGACTGAATGTTAAAGCTGCAAATGTCAGAGCTATTGTATGTAGTGCATATTTTTCCACTGTACTCAATAAATGTTATTTTGTTATTTGTAGGCTGTCATGTATTTAAACCAGATCTAGACCTTTATAAATTGGTTTCGCCTATTGAGAATTTAGTATGGTATTAGTAAAAACAGTACCGTTTTATTTTTTAAAATTACTATGTTTTATATATTAATTTTTATGTTTAAAAATTCTACATACATCCAAAAATTCCAGTTGTAACAGATTTTTAAGTAACTCACGTCTAGAGTAAAACTTTGGCTCCTTCTCTGACCATTCATATTTTATTTTTACAGAGTTTTGGTAAACCTTGCTTTCTTATTCGTAGGTTCTTAAAAACCAGCATTTTAATGTTTTGATAATGAGAATCCACAGTATGCATTTGGTACAAGTCTTGAAAATAGTGCAATATACTAAAAAGGATATTTTTAAAGAGATCTAAAATTCTTCCTCTCTCCCCCAATAGTAAATAAGTGAGTACGTCAGGTTAATATTATGGGAAACCAGAAGAGAGCTGGGGATTTGGGGGTGTTTATTCACCTGCCTTCCATTTATAATTTTGTAG
Seq C2 exon
GTACAGAACTGGAACAGTGAAATTCTTGCTAAGCAAAAACCTCTTATTGCCAAACCTTCTGCAAAGCTACTCTTTGTCAACAGACTGAAGGGGAAAAAATACAAAACGAATTCCTCCACTAAAGTTCTCCAAGATGCCAGTAATTCTATTGACCACCGAATTCCAAATTCTCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121957-GPSM2:NM_013296:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)