RnoINT0067130 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211492911-211495877:-
Coord C1 exon
chr2:211495807-211495877
Coord A exon
chr2:211493091-211495806
Coord C2 exon
chr2:211492911-211493090
Length
2716 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGC
5' ss Score
6.12
3' ss Seq
TTTCCATTTTCAATCTATAGGTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGCAGGCACCAAACTGGGACGAAGACATAGTATGGAGAACATGGAACTTATGAAGTTAACACCAGAAAAG
Seq A exon
GTCGGCAGTCTCAGCTTTCACATTCCGGGAACTGTTAAGTAAAAGCGTTTAAGCCTTGTCCTCTGTGGACATCACTTAAAAGATTGCTTTTTAAAAGAGCCAGAAAAAACCCAGTGCCAAGGGGATGAGAATAGCATGCTGTCGTGTGCTTAGTAACGATCAAGCATATACTCTGTATAGGCTCATGTAGCACTCCTGGAGACGTACATAAGAAAAGTTACAGTTCCTGACTCTGCAGGGTATTATTTGGAATAGGTTAGAAATATTTTATATGCTATTTTGAATTGTCTGAACATTTTCCCTTGTTAAAAGAAAAAGGTTTTAATTGAATGCATCTTTCAGCTACATAGCAAGATCATTTGCAGAGCTGTGTGTGAACATGTGTGTGCACGTGCGTATACGTGCATCCCCAGGCCACGTGTGGATGTCAGAGAGCAACTTCAAGGAGTCAAGTCTGTTCCAGCTTTTAATAAAGAAAACATTTATGTGTGGCAGGAGGTGCACAGGCAGAAGTCAGAGGACAGCTTGTGGGAGCTGGCTTTCTCTCCCTCCTGTGGGCTCCAGGGTCATTAGCCTTGGCAGCAAACAGCTTTACCCACTGAGCCACATTTAGCCCCCCCTTGCTTTTTGAGACAGTGTCTCTTCCTCTCTCCCTCCCTCCCTCTTCTGCACAGAATATCCTAAGCTAGCTGGCTCACAAGCTTCTCATTGATTCTCATGTGTCCATCCCACCCCATAACACACCCCTACCCAGTCTGGAATTACAGATATGCACTACTACTGGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGAGACCAAGCTTTGGTGGATGTCAGAGGACAGTTTTCAGGAGTCAGTTCTCTTCGAATGCAGGATTAAACTCAGGTCTTCAGGCTTGCATAGCAAGCATAACACTTATCTGCTGAACCATCTTGCCAGACCTGAAAGAATTAGTCATGTGGTGGTTTTTTTTTTTTCCTTCTTCATAATAAAGTTAACAGTTAAGTTTTAAAAAAGATTTATTTATATGAGTGCACTGTTACTTTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTGTGAGTCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTAACCTCTGAGCCATCTCACCAGCCCCCAAGTTGACAATTATTTCACTATTCTTGCTGGGGTAAGGTGCTTCCTGGGGAAGCGGGTACAGTGCAAGAGAAGAGAGGCTCTGATGTCTCCTATTGGAAGTGTGAGCGTGCCTCTTCCTGCTCTCTCATTTGACTGATCAGAGTTTGCTGACTTTAGATTCTTGGCTTAGGCATGTAGATAGAGAATGTTTGAGATACTGGGTGTACACACACACACACACACACACACACACACACACACACACACCAACAAAAATACTGAACAACAAAAATAACTTTTATTCTTTGATTGCTTATGCCTGCATATCGTGTATTTGGGTCATATTCATCACATCTCTTCCCTTTCTCCTCCCACTCCTGCTGAGCCCTTTCTTCCCAAAAGAGTCTCCTCCTTTATCTCTTTAAAAGAAGGAATTCTTGATTAGAAATAACTTTCCCTCAGATTTTTTAAGGCACAATTCCCCTTGAACATTTCTTTATTTTATTAGAATGGATTTTGAGGTATAGTTTTATGTTCTTAAATCCAGGCCATTTTTTTCCTACTCATAAAATAAGACCATGGAGCTACACAGAGAGGCCGTGTCTCAAACAAACCAACAGGCAGACCACAAAGTTCCCTCTAGCAAGTGATTTCCCCTGTGACTGTGCCTGACTTGCTGGCTACGCACCTCACTCCTGTCAGCCTTGGAGTCAGCCTTGGAGCAGGGACTAGCCTGCTGGTTTGTACCTCATGGGGGACTCTCCTAGATTGGTGGAGCTGTTCTGTGTCTTGATTAGGGGGAGTTCCATGGTTCCCAGTGGTACACATAGCTGCCATGAACCATCTGTGATGAGTTCACACTCAAGCATAGAGTGTATCATGGACTGCCCTCGCCCAGTGGCAGGCTGTGTATGGCTGAGGTTGAATGTGCAGTCCTCCCGTTCTGAGTAGCAGCCATTGCACCTGACTTAAACCAATCCGCCCGATTCGTCTACTGAGAGTTTACAAGATTCTAACTGTAACAGGTTTTTATTTGATTCAGATTCAGAATAATACATTATCTTCCCTGACCATTCAAAATATATAGTTTAAAGGATGTGGGTAAACGTTGTTTTTCTGTTTGTATCACATATGCCTATGATGCACAATGTTGAATATGTTGAATGGAATCATTAAGGTTGTGAGGCTAGCCAGGCATGGTGGTGCACGTCTTTAGTCCTGGCTGTAGGGAGGTAGAGGCAGGCAGATCTCTGAGATCGAGGTCAGCTCGGTCTACACATTGAACTCCAGGACAGCCAGGGCAGTTACACTGAGAAAGGAGCTGAGGCTGAAGGGTCGCAGGGCCAGATGAGTCCAGTCAGGCTGCCTAAACACCAAACACACGATAACGGCAGCAACACACAGCCTCTCCAGGGGTCGTGGCTGTCCCGTCCCAGTAGTCAGTGAGCACTGGGAAGGTGGCTTTTTTAATGTCTTGCTTTCCATTTTCAATCTATAG
Seq C2 exon
GTCCCGAATTGGAACAGTGAAATTCTCGCTAAACAGAAACCTTGCATTGCCAAATCGTCTGCAAAGCTCCTATTTGTCAACAGACTGAAGGGGAAAAAGTCCAAAAGCGGCAGCGCCTCCACTAAGGCTCTCCACCACGCCAGCAACCCCATCGACCACCGCGCTCCACATGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]