BtaINT0068793 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28019961-28021755:-
Coord C1 exon
chr5:28021689-28021755
Coord A exon
chr5:28021173-28021688
Coord C2 exon
chr5:28019961-28021172
Length
516 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCCGTGTCTTCTGCCCCCAGGTC
3' ss Score
13.16
Exon sequences
Seq C1 exon
CAAACCCTGTATGAGAAGTGGGGAGAATACAGGTCCCTGATGGTGCAGGAGCAGCGGCTGGTGCATG
Seq A exon
GTGAGTAGATCAGTGTTGGGAAGGGTCACTTGTGCCCCCATCTCTACCCCCATACCTGCTTCCCCCTAGGAACTAGTCCGTTACTTCCCCTTCCAAGTTTTGCTGAACTACTACTCTGGGTACAATGCTGCCCTGGGCTGATGCCCACATATTTTCATTCTCACAATAGTGCCCAGAAGGAAATTACTACACAGAACCATCTCCATTTTACAGGTGGGAACACCAAGGCTCCAAAAGCTTGTTTCAGGCCCCTTTCCTGACTCTTGTGTCACAGTTCAGTTCCGTTCAGTCGCTCAGTCGTGTCCAACTCTTTGCGACCCCATGAATTGCAGCACGCGACCCTCATAAGGATCTGAGTGTATAATTCGTGTTTTACAGACCGGGGAAGTAGGGTTCAAAGTTTTGACTTGCCCAAGGGCCACACTGATGGTCATCAGGAAGGGGTGAAGGTCCCCTACCCGTGTCCTCTGACGTCTGCCCCCCGCCCCCCCCCCGCCCCGTGTCTTCTGCCCCCAG
Seq C2 exon
GTCTCGTGGTGAAGGACCCGAGCATCTATGACACGCTGGAGTCGGTGCGCTCCTGCCTGTACGGCGCGGGCCTGCTCCCGGGCTCGCTGCCCTTCGGGCCTCTGCTGGCCGCCCCGGGAGGCTCCCGCGGGGGAGCGCGGCGGACCGGGGGCGACTCAGACGATGCAGTCTATCACACGTGCTTCTTCGGGGGCGCTGAGCCGCCTGCGCCCCCCCCGCCGCCGCCGCCGCCCCTCGCGCGCCTGCCGGGACCGGGCGCGGCGGACGCTTCGGCCCCGGGGTCCCGGGCGATGCTGAGCCGCAGCGCCAGCGTGCGGTGCGCGGGCCCCGGGGGCGGCGGCGGCGGCGCGCCCAGCGCGCTCTGGACTGAGGCTCGCGAGCAGGCCCTGTGTGGCCCCGGCCTGCGCAAAACCAAGTACCGCAGCTTCCGCCGGCGGCTGCTCAAGTTCATCCCCGGACTCAATCGCTCCCTGGAGGAGGAGGAGAGCCAGCTGTAGGGGCGGGGGCGGGCGGGGGAACGTATTTATTTATTTATTCTTTCCAGCCAGTGCAAAAAGGGGGCGGGGGCGGTCGTTTGGCCGCCACGGGGACTCCAAGAGCCCAGAGTAGCCGGAGAGGGTCCTTGGCAACCCCAGCTGGTCCTGGCAAGTCTCTGCAGAGTGGTGAACCCAGCCCCAGGCCTCTTTAGTTGTCCTCCCCCAAACTACAGTGGGAGGTGGGCACAGGAGAACCAGAGAGTTCGGGGTTGGGAGAGGTTCGGGGGCCAAAAATGGGACGTGCCATCCTACATCTGGGTCAGTAGTGCCTTGTGGGGTGTCCAGGAAAACTCCTCCTCCAGGTAGGGGGACCCTGTCCCACGAAGCCCTCTCCTCAGCTTTACTTGCTCCCCACCCTTGGCCACGGGGAGAAATGGCCTCCGCCCGGTCGTTCCCCTACCCACCCCACACAGACACAGTTCCAGTTATCCAGTGGGCACTTGAGGGGGCCCAAGGTGCTGGTCTCCCTCCCTCTCAGCCTTGACCCTTAAGGGCTTGGCCCCCCTAGGGGCCTGTAACTAAGTGGGGTCCTACTGGGCAGGGGTCCTGGGTCCTCTGCCCTTGGGAGATAGGAATGGGCACATCCGGGTGGGTGAGGGCAGTACAGACTGTTCCACCATTTGCATATTGTTGCTTCTGAACCACAAACTGTATAAAATGGACGGTTTTTTGCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658:ENSBTAT00000028862:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.503
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGAGAATACAGGTCCCT
R:
CTCAGCATCGCCCGGGAC
Band lengths:
348-864
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]