HsaINT0072116 @ hg19
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:18707]
Coordinates
chr12:52407919-52409671:+
Coord C1 exon
chr12:52407919-52407985
Coord A exon
chr12:52407986-52408477
Coord C2 exon
chr12:52408478-52409671
Length
492 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCTCCCGTCTCTGCGCAGGCC
3' ss Score
11.66
Exon sequences
Seq C1 exon
CAAACCCTGTATGAGAAGTGGGGAGAGTACAGGTCCCTAATGGTGCAGGAGCAGCGGCTGGTGCATG
Seq A exon
GTGAGTAGATCCCGGGGTGTGAGGGGCCACTTGTTCTGCTACAGACACCCCATCTGCGCTTCCCCCTCAGAACTGGCGGGTTCTAGTAAAGAACGGTTTACTAGTAAACCTCCACAGTAAAGCAAGGTTTGTTGAGCTACTACTACTTTGGGTACTGCCGCAGCCACATTTCTGGTTATTCTCACACTAGCCCTCTGCAGGTAAGTAACAGATAGTGTCATCTTCACTTTACAGAGGGGAACACCAGGGCTCAAAGAGTTTGTGTCAATTATTTCCGAGGCCCGTTTGTGCTAAGCGGCCCCCATAAGGATCTGAGTGATAATTCCTGATTTGCGGGTGAGGGAAGTAGGGTCTCAGGTTTGTGCCTGGCCAGGGCCACAGAGATGGTCAGCAGGACGGAGCGGGGACGCCCCGCCCATGCCCTCCGACCCTTTGCAGAGGCCACCACGGTCCAGGCCTGACCCGCCCCCTACCTCTCCCGTCTCTGCGCAG
Seq C2 exon
GCCTGGTGGTGAAGGACCCCAGCATCTACGACACGCTGGAGTCGGTGCGCTCCTGCCTCTACGGCGCGGGCCTGCTCCCGGGCTCGCTGCCCTTCGGGCCTCTGCTCGCCGTGCCCGGGCGTCCCCGCGGAGGCGCCCGACGGGCCAGGGGCGACGCCGACGACGCCGTCTACCACACGTGCTTCTTCGGGGACTCCGAGCCGCCGGCGCTGCCGCCCCCGCCGCCCCCGGCCCGCGCCTTCGGCCCGGGCCCCGCCGAGACCCCTGCCGTGGGGCCGGGCCCTGGGCCGCGGGCCGCGCTGAGCCGCAGCGCCAGTGTGCGGTGCGCGGGCCCTGGCGGGGGCGGAGGCGGGGGCGCGCCGGGCGCGCTCTGGACTGAGGCTCGCGAGCAGGCCCTATGCGGCCCCGGCCTGCGCAAAACCAAGTACCGCAGCTTCCGCCGGCGGCTGCTCAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGAGGAGGAGAGCCAGCTGTAGGGGCGGGGGCGGGCAGGGAGGTATTTATTTATTTATTCGCAACAGCCAGCGCTAAAAGAGGGGGAGGCCGAGCCAAGAGGACCCCAGGAGCCCAGAGCAGCGGGAGAGGGTCCTTCCTAGCCTCGGCCCGCCGGGTCGGTTCCTGGCTGGTGTCTGCTGAGGGAGTGGGGGGCCCAGCCCCTTCTCTTCTCCCCCGCCAAACCACAGTGGGAGCTGGGGCAGGGGGAGAGCCAGGCAATCGGGGGCCAAAGATGGGGGTGCTCGCCTACAGTCTGCATCTGTAGTGCCTTGTGGGGTATCCAGGAACACCCTCCCAGCAGGGGATGGGAACCCTGTCCCATGAAGCCCTCTCCTCAGCTTTACTTGCTCCCCCGCCCTTAGCCTTGGGGAGAAATGGCCCGTGGTGGGCTGACCCCCCACCCTCCACACACACAGTTCCATGACCCAGCGGGCCCCCAGGGGCATCAGGTGCTGGTCCTCCTCCCTCCTGGCCTCGACCCCTAAGGGCTTCGCCCCTCCCAGGGGCCTGTAACTAAGTCGGGTCCTGCCAGGCAGGGGGCCTGTGTTCTGTGCCCCTTGGGAGACAGGAACTGGCGAGTTCAGGTGGGGTGGGGACAGCACAGACTGTTCCACCGTTGTGCATATTGTTGCTTCTGAACCACAAACTGTATAAATGGATGGTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-GRASP:NM_181711:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCTAATGGTGCAGGAG
R:
CGAGCCTCAGTCCAGAGCG
Band lengths:
422-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)