RnoINT0067294 @ rn6
Intron Retention
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142876174-142878012:+
Coord C1 exon
chr7:142876174-142876240
Coord A exon
chr7:142876241-142876824
Coord C2 exon
chr7:142876825-142878012
Length
584 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTGATCTTCTGTCCCCGCAGGCC
3' ss Score
13.01
Exon sequences
Seq C1 exon
CAAACCCTGTATGAGAAGTGGGGCGAATACAGGTCGCTTATGGTACAGGAGCAGCGGCTAGTGCACG
Seq A exon
GTGAGTAGGTCGGGCTGTCGCGGCGGACACCCCCATCAGCCCTCCCCTCTTAGAACTAGCAGGCTGCTGCCCTCTGCAGGGGTGGCCTGGAGCTACTACTTTGGACCCCACGTTACCCTAAACTGATATACAGTTTTGTTCTCGCAGTCGCCCTCTGGAGGTTAAGGTTGAGTACTGCTGTTTGGTGCAGGCCATTAATCTCAGGAAGCAGAGGCAGGCTGATCTTTGAGGCCAGCCTAGTTTACAGTAGTAAGTCCTAGGACAGCTAGGGTTCTGTAGAAGGACCCTGTCTCCAAAAGAGGAAGTGTGTGCGTGTGGTGTGCATGTGCGCGCGCACGTGTGTGTGTGTGTGTCCTTTCTGTGGACTGCCTTCCTGTCTTAAGTGGCGTTCTTGAGTTTATTAACTCCAGCTTTACAGACAGAAAGACTGGGGCCCGGAGCCCGGAGCCCGGAGCCCAGGGCCCAGGGCCCACGATGGTAGCCACGAGGAAAGAACAGGATCTTCTGCCCACGCCTTCTGACCCTTAGCCTAGGGCGCTCTGGCCCCAGGATTCTGGAAGCTCCCTGATCTTCTGTCCCCGCAG
Seq C2 exon
GCCTGGTGGTGAAGGACCCAAGCATCTATGACACACTGGAGTCCGTGCGCTCCTGCCTCTACGGCGCAGGCCTGCTTCCCGGCTCGCTGCCCTTTGGGCCTCTGCTCGCAGCGCCTGGGGGTGCCCGCGGGGGCTCACGGCGGGCCAAAGGGGACACGGACGACGCCGTGTATCACACGTGCTTCTTTGGGGGCGCCGAGCCGCAGGCGCTGCCGCCCCCACCGCCCCCCGCGCGCGCGCCAGGCCCGGGCTCCGCCGAGACTCCGGCGTCCGTGCTGTGTCCCGCACCCCGTGCCACGCTCAGCCGCAGCGCCAGTGTGCGGTGCGCGGGCCCAGGCGGGGGCGGCGGCGGGGGCGCGCCAGGAGCCCTCTGGACTGAGGCCCGTGAGCAGGCCCTGTGCGGCGCCGGTCTACGTAAGACCAAGTACCGCAGCTTCCGCAGGCGGCTGCTCAAATTCATCCCCGGACTCAACCGCTCCCTGGAGGAAGAGGAGAGCCAGCTGTAGGGGTGCGGGTGGGCAGGTGGGAAGTATTTATTTATTTATTCATCGTAACAGCCAGTGCAAAAAGTAGGGGCAGTAGGGGCGGTCCAAGGACTCCAGGAGCCCAAAGCAGCAGGAGAGGGTCCTTGCTAGCTCTGGTCCTTCTGGTCTGGTTCACTGCTTGTCTGCTGGGGGGAAAAAGGGCGCTGAGCTGCTTTCTGCCCTCCTCTAAACGACAGCAGGAACTCTGCAGGGGGTGAATAGACATTGGGAATTGGGAGAGGTCTGGGGGACCAAAGAGGTCTGTGCCGGCCTATAGTCTGGGTCAGTGGTGCCTTGTGGGGGCCCTGTGCCAAGAAACCCTCTTCTTACCTTTATTAGCTCCCCAACCTTGGGGAGAGATATCCACGATCATTGATCATTCCCCACCCTACAGAGACCCCCACACAAACACACACCAATGGACCAGTGGGCCCCAAGGGGGCAAGGTGCTGGTCCCCTCCCCCCAACCTTGACCCTTAAGGGCTTAACCCCTGTCCAGGGGCCTGTAACTAGGGGTCCTGTCAGGCAGGGGTCCTGGGTTCTGTGCTCCTTGGGGAACAGGAATGAGTTCGTCAGGTGGGGTGGGGCAGCCTGGACTGCCCCACCGTCTTCTACATATGTTGCTTCTGAACCACAAGCTGTATAAAATTGATGTTTTTTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346:ENSRNOT00000009979:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.399
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACAGGAGCAGCGGC
R:
CAGTCCAGAGGGCTCCTGG
Band lengths:
405-989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]