HsaINT0072116 @ hg38
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr12:52014135-52015864:+
Coord C1 exon
chr12:52014135-52014201
Coord A exon
chr12:52014202-52014693
Coord C2 exon
chr12:52014694-52015864
Length
492 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CCTCTCCCGTCTCTGCGCAGGCC
3' ss Score
11.66
Exon sequences
Seq C1 exon
CAAACCCTGTATGAGAAGTGGGGAGAGTACAGGTCCCTAATGGTGCAGGAGCAGCGGCTGGTGCATG
Seq A exon
GTGAGTAGATCCCGGGGTGTGAGGGGCCACTTGTTCTGCTACAGACACCCCATCTGCGCTTCCCCCTCAGAACTGGCGGGTTCTAGTAAAGAACGGTTTACTAGTAAACCTCCACAGTAAAGCAAGGTTTGTTGAGCTACTACTACTTTGGGTACTGCCGCAGCCACATTTCTGGTTATTCTCACACTAGCCCTCTGCAGGTAAGTAACAGATAGTGTCATCTTCACTTTACAGAGGGGAACACCAGGGCTCAAAGAGTTTGTGTCAATTATTTCCGAGGCCCGTTTGTGCTAAGCGGCCCCCATAAGGATCTGAGTGATAATTCCTGATTTGCGGGTGAGGGAAGTAGGGTCTCAGGTTTGTGCCTGGCCAGGGCCACAGAGATGGTCAGCAGGACGGAGCGGGGACGCCCCGCCCATGCCCTCCGACCCTTTGCAGAGGCCACCACGGTCCAGGCCTGACCCGCCCCCTACCTCTCCCGTCTCTGCGCAG
Seq C2 exon
GCCTGGTGGTGAAGGACCCCAGCATCTACGACACGCTGGAGTCGGTGCGCTCCTGCCTCTACGGCGCGGGCCTGCTCCCGGGCTCGCTGCCCTTCGGGCCTCTGCTCGCCGTGCCCGGGCGTCCCCGCGGAGGCGCCCGACGGGCCAGGGGCGACGCCGACGACGCCGTCTACCACACGTGCTTCTTCGGGGACTCCGAGCCGCCGGCGCTGCCGCCCCCGCCGCCCCCGGCCCGCGCCTTCGGCCCGGGCCCCGCCGAGACCCCTGCCGTGGGGCCGGGCCCTGGGCCGCGGGCCGCGCTGAGCCGCAGCGCCAGTGTGCGGTGCGCGGGCCCTGGCGGGGGCGGAGGCGGGGGCGCGCCGGGCGCGCTCTGGACTGAGGCTCGCGAGCAGGCCCTATGCGGCCCCGGCCTGCGCAAAACCAAGTACCGCAGCTTCCGCCGGCGGCTGCTCAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGAGGAGGAGAGCCAGCTGTAGGGGCGGGGGCGGGCAGGGAGGTATTTATTTATTTATTCGCAACAGCCAGCGCTAAAAGAGGGGGAGGCCGAGCCAAGAGGACCCCAGGAGCCCAGAGCAGCGGGAGAGGGTCCTTCCTAGCCTCGGCCCGCCGGGTCGGTTCCTGGCTGGTGTCTGCTGAGGGAGTGGGGGGCCCAGCCCCTTCTCTTCTCCCCCGCCAAACCACAGTGGGAGCTGGGGCAGGGGGAGAGCCAGGCAATCGGGGGCCAAAGATGGGGGTGCTCGCCTACAGTCTGCATCTGTAGTGCCTTGTGGGGTATCCAGGAACACCCTCCCAGCAGGGGATGGGAACCCTGTCCCATGAAGCCCTCTCCTCAGCTTTACTTGCTCCCCCGCCCTTAGCCTTGGGGAGAAATGGCCCGTGGTGGGCTGACCCCCCACCCTCCACACACACAGTTCCATGACCCAGCGGGCCCCCAGGGGCATCAGGTGCTGGTCCTCCTCCCTCCTGGCCTCGACCCCTAAGGGCTTCGCCCCTCCCAGGGGCCTGTAACTAAGTCGGGTCCTGCCAGGCAGGGGGCCTGTGTTCTGTGCCCCTTGGGAGACAGGAACTGGCGAGTTCAGGTGGGGTGGGGACAGCACAGACTGTTCCACCGTTGTGCATATTGTTGCTTCTGAACCACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835:ENST00000293662:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCTAATGGTGCAGGAG
R:
CGAGCCTCAGTCCAGAGCG
Band lengths:
422-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development