MmuINT0073614 @ mm9
Intron Retention
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101061416-101063187:+
Coord C1 exon
chr15:101061416-101061482
Coord A exon
chr15:101061483-101061947
Coord C2 exon
chr15:101061948-101063187
Length
465 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CGGGTCTTCTGTCCCCACAGGCC
3' ss Score
12.1
Exon sequences
Seq C1 exon
CAAACCCTGTACGAGAAGTGGGGAGAATACAGGTCACTTATGGTACAGGAGCAGCGGCTAGTACATG
Seq A exon
GTGAGTAGGTCGGGGCGTCCCCACGGATACCCCCAGCAGCACTCCCCTCTTAGAACTCACAGGGATGGCCTGGAGCTACTGCTTGGGACCTCACATTGCCCTAAGCTGATAACACAGTTTTGTTCTCACAGTCGCCCTCTGGAGGTTAGGGTTGAGTACTGCTGTTTGTTGCCGGCCTTTAATCCCAGAAGCAGAAGCAGAAGCAGAGGCAGGCTGATCTCTGATGCCAGCCTAGTCTACAGTAGTAAGTCCTCGGACAGCTAAGGCTCACTTCTGTGGACTGCTTTCCTGTCTTAAGAGGCGTTCTTGAGTTTAACTCCAGCTTTACAGACAGAAAGACTGGGGCCCAGGGCACTCGTAGGTAGCCACAAGGAAAGAACAGGATCTTCTGCCCATGCCTTCTGCCCCTTAGCCTAGGGCGTGGCTCCAGGATTCAGGAAGCTCCCGGGTCTTCTGTCCCCACAG
Seq C2 exon
GCCTGGTGGTGAAAGACCCAAGCATCTATGACACACTGGAGTCCGTGCGCTCCTGCCTCTACGGCGCAGGCTTGCTTCCCGGGTCGCTGCCCTTTGGGCCTCTGCTCGCCGCGCCTGGGAGTGCCCGCGGGGGTGCGCGGCGGGCCAAAGGGGACACAGACGACGCCGTGTACCACACGTGCTTCTTTGGGGGCGCCGAGCCGCAGGCACTGCCACCCCCGCCACCCCCCGCGCGCGCGTTAGGCCCGAGCTCCGCGGAGACCCCCGCGTCCGTGCTGTTTCCCGCACCTCGCTCCACGCTCAGCCGCAGCGCCAGTGTGCGGTGCGCGGGCCCGGGCGGCGGCGGGGGCGCGCCGGGCGCACTCTGGACTGAGGCCCGCGAGCAGGCCCTGTGTGGCGCCGGCCTACGCAAGACCAAGTACCGCAGCTTCCGCAGACGGCTGCTCAAGTTCATCCCCGGACTCAACCGCTCCCTGGAGGAAGAGGAGAGCCAGCTGTAGGGGCGCGGGTGGGCAGGTGGGAAGTATTTATTTATTTATTCATCGTAACAGCCTGTGCAAAAAGTAGGGGCGGTAGTGTCGGTCCAAGGACCCCGGGAGCCCAAAGCTGCGGGAGAGGGTCCTTGCTAGCTCTGGTCTTTCTGGTCGGTTCATTGGCTTGTCTGCTGAACAAAAAAAAAAGGGGGGGGGGGCTAGTTGCTTTCTGCCCTCCCCTAAACCACAGCAGGAGCTCTACAGGGGGAGAATAGACACTGGGAATTGGGAGAAATCTGGGGGACCAAAGAGGGCTGTACCAGGCTAAAGTCTGGGTCAGTCGTGCCTTGTGGGGGTCCTGTCCCAAGAAACCCTCTCCTCAGATATACTGGCTCCCCAGCCCTTCCTTAGCCTTGGGGAGAGGAGATCCACGATGGATCATTCCCCACCCTACAGAGACAGACAGACAGATACACACACACACACACACACACACACACACACACACACATCAATGGACCAGTGGGCCCCAAGGGGGCAAGGTGCTGGTCCCCTCCCTCCAACCTTGACCCCTAAGGGCTTAACCCCTGTCCAGGGGCCTATAACTAAGTGGGGTCCTGCCAGGCCGGGGTCCTGGGTTCTGTGCTCCTTGGGGAACAAGAATGAGTTCATTCAGGTGGGGTGGGGCAGCCTGGACTGTTCCACCGTTTTCTGCATATGTTGCTTCTGAACCACAAACTGTATAAAATTGATGGGTTTTTTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-Grasp:NM_019518:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.331
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTACGAGAAGTGGGGAGA
R:
CGGGAAACAGCACGGACG
Band lengths:
347-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: