BtaINT0072260 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001252 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr23:44161398-44166200:-
Coord C1 exon
chr23:44166025-44166200
Coord A exon
chr23:44161500-44166024
Coord C2 exon
chr23:44161398-44161499
Length
4525 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AAACATTCTTTTCCCTTAAGGAA
3' ss Score
6.61
Exon sequences
Seq C1 exon
ATATAAATCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTGTGAAGAATGCGGAATCCGCTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCACACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACGAAAG
Seq A exon
GTATGAGACGACACTGCTTCATAGTCCTTTATTATATGCATTAAGTCAGTAGAGCCAAGACCCAGCTTTGCATATTATTTGACCAACGATGCAGTAGTTTAAATAAACTAATATACATTATACCTTATTAGCATCATGTTTTTATTTCTTTCTATATTTCTAGACCTCAGATTTTAATTACCTACTTTGAGAATATATGTAATAAATATGACATTCGAAAAGGAGCAAGTGCCCTTTTTTCTTTTACTCCCCAAATTACAGTTGTATAACGTGATGACTAATACGTTTTCAAAATTCCTTATTTTGGGGCCAAAGAAGAAAAAGAAATTTTTGTGATCACAAGTAAATGCATTTCAGTGCTACAAGATTAAAGACAAAAATTAATAAGTACAGTAAAATTATACTGATTACATTCATGTTTTATTATCTAATTTTAGTCATGCATAGCCATTTCTTTTTTTTCCATGAAACATTTATTTTACCCAAATTCTTTGGAATTTGTTTCAAAGTTTTCTTTTATACTGTGTAATTATTATAGAACTTAGAACTAGTAGTTAAAGTTACATTTAGTACCATTTCTGTACTCTTTATATGTTTTTATTTAAATTGTAAGGCTTTATTATAGTTAAGGTAATTTTACCTTCTGTAAATTTCCTGTTACATATAATGAATGCACTATTGTAAAATGTTTGCTTCCTCCATTAGGTTCCTTGTTTATGGATTATTGTATAAAAATTAGTTGCTTGAGGCTTCAATTTCATATACCACCCTTTACAAAATAAGACTCTCTCAAATACAAGGCAGTGTGATCATAAAATTATTTGTCTAAAAGGACAAAATCTATGAAAAATATTTAATCAGTAACTTTTTCACAGAACGACTTTCCTTTTAGTTAACATTTGCTTTTTTCTTATTGTATTGGTTGACTTTGAGGTTTTGTTTTAAAGATTGATCAGTTCTTCAGCAAAGTTCATTACCTTTTTTGGCTACTGTTTATTGGCATTTAAGGAGAGTTATAGTGTATAGTAGCTTCTAATTAGCTCTCCTTAAATGCCAGTAATACCTGAAACAAGAGTGATGGGGGAAAACAAAACCGTGATCCAAATAGTCTTGAATAGTTCTAAAGTTTCAAGAAATCATGAGTTGGGAGCAACCATGATTCTGTCTTTCTTGATGTATAGAGGAGTTCCTTCTAGAAATGGAGAGTGTATTTCAGGATAATTTTCCTGATCTTGTGGGAAGGCTTTGATAGGATTAAGTGGTTTGATCTTTTAACCCAATTCATGGCTTTTACACTGGTTTTGACCCTAATGATTATGAAATGCCCGTCTGTTAAATAATTTCCAGTGTGAGACCAGGAGATTAGCAATAGCCCAGTATTTACAAATAAAAGATGACCAGGTACAAAGTGATGTTACCAGATAAAAGAGGATCAAGGTATAATGTGAAATGGGTATTTCTCGGTAGAAGGAGGGAAAGGAATCAGGGTATTTTAAAGGTATATTTATAAGGGCAAGAAAGGAAGGAAAACGTAGATGTGGAAAACCAAATGGAACCACAGAGATTTCTTGGCAAAGAAGAATTTCATGAATCATCAAGTATTAATCCTAGTGAGATAGCTCAGACCAGCATCATGTAGAATTTAAGATAAATGTCTATTAAGTGGTGGACGGGGCATTATGATCCGTGAAGAGTGAGCAGTGCATGTTAGCAGTCTTCCTGTCTGTCATTTCTCAAACATGCCACACATGTGAGTTTACGTTAAACTTTCTGTTTTGTCAGATTGTTCATTGGAATTACACGATAAATACTTATTTAAAGAAAGCTACCCAAGCTAAGGAGACTGGTGAAGAAAATGTCAGAAATTCACTATTTCCCTATTCTCCTCAGGGCAATTCTCTTTTCTGTGGTCAGCTTCCCTGTAGAAGACTACCTTTTGTGAATGTATGTGGAACAGATTCCATAGTACCTTTTAAAGGCAGCTAAATAATAAAAGTCTTGTTTTTTGATGAGACTGTAGATTTTGCCCTACTCTGATTGATTTGGTTTTCCCAAGCAGTTCACCTCTACTTCTTATTGGATGTGTCTGATTATTAACAGAAAGTAATAGTGATGTGACGGCATGCCCTATAAATAGGAGTATGCAAAGATAGCATTGCTCTGTTCTCCTAGACTTTGATGCTTCTGATGGTCATGCTTGTAAATCTGTGCTTCATCGTTTGTCCTCTCAGTTTATTTTATGAATGCATTTTCAAACCAGTTTTAATTGATTTGTCTTCATTATTCTACTTTAAAGGTCAGTCAGCAGAAAATACACATTGAGCTTGCATCTCTGCAGGATTTAGGCCCATATATAAAACAGAAAGTTGGGCTCTCTCTATATATAGCTATAGGAACCCAGAAACAAAAGCTTCCTGCTTTCCAGAGGATTTAGATTAATGTTTATTAAATCTGTTGAAAAATGTATTGTGTTAAATTAATGCACCAAGTTTAAAGCATTGCTAGGGGATATTTGCATTTTAATATGCATGTTCTGCATATGAAATGCAAATTGCTTTATTTTAAATTATTTACAAAGTTGGTTAATAATAAGTAATAGCTCAAGTTATGAGAAAATATGCTTATTAAAAACTTTATATTCCCAAATTTGCCTCCTTACAATTATACATCTATCTCTTAGAAAACAAATGACCTCTATGACTACCTATTTATTAAGGAACAAAAGCATTTTGAAAGAACTATTAGTGGACCTTGTAAGTTGGTTTGTAATATTGATATCATACTAGAAAGTGTTTTGACTTGTAAATGGAAATTTCAGCCACAATAAGATGGGAAAACTAGTCATAACTTTTAGTATGAAAATTTTGAAGCATACAGAAAAGTAGATATTTGTATAATGAGCACCAGTATACCCATCATCTTTTAATAGTTGTTAACATGTTGCCAAATTTGCTTCATGCTTTATTTTAAAATAAATGTCAGACCTGGCAAGTCATTTAAGCTGGACATTCTCTCTAGAATCACAGAGGTCAGGGTTTGCTGGATCCTAGTATCTAGTCCGGGCCCCGCTTTCACTTGAACCTGTTAAGCCCCAAGCTCTGGGATGTTGTACATACCAACTAGTGCAAGAATTGGCCTAAACAGGTTTGACCAGATCCACCGGCTCACTGAATTTTTAGTGAAATTGAAGTTCTATAAATATTGCAGTTTCACTGGTCTTCTAGCTACCGCAAGATTTGGCTCCAAGTCTGGACCAGTGATTCAGACATGTTTATCTCTTCTAAAGGTTTATTCTCAAATACTAATATGCCCCTGCTCACCAAACCCAGCATTTAGATTTTGTTTCTTTTCAAAAGAGGTGATTTTCCCTTCTTGGCAATTTTGGGTGTGTGTGGCATTATCCACTCAAGCTGCTTGTTATCCTCTAGAGAATCTGAGTTCTCTCCCTGTATTAATGATCACTTTGGGCCAGCATGCCCAGTGGTTCCCAGTGTAACCCAGTGGGTCAATATACCAGCTGTCAGAGGAAATACCCCTTTAGGGTTACTATTAGGAGACTTTTAGTCAGAAGAGTGAAGTGAAATTAATGCAGAAAATTCTTTCTCTTGTTCCAAACACACAGAAATACTATTTGTAATACAACAACTAACTATAGTTTTGAATGGATAGCCAAGCTTGAAATTTATAAAGACAGATTTCAGATAACAAAAATAAAAAAGAAACTCCAAACTAGCACGGTGAACAGATAATGGAAAAAAAAAAGTCCATAAAGGCATCAAGCCAGATATATGTCCACAGACCTGGGGATTCATACTCGTCCTAGAATGGAGTCTAAGGCCTCTGAAAGAAGCCTGGCTCACCTGTCCAGTGTCTTTGGATCATGTAGGGGAAAAGCTCCCTGCTGAAAAACAAATCCCTATACCTATGCCATGCCAAAAAGATCCCCAGATTCATCCAGAATTACTGGAATGAAGCTTTTCAAGTCTCAGGCAGAAGCATCTGGAAAACCGACATAGAGATGTCTACAGCCCAGGGTGCTTACAACTTCATGCAGAACCATCTTGCTCAAGATAAGTTTACAATAAAAGCTAAGAAGTGTACAAGGAAATAAAATACTATGAGGGAAAGCCAGCAAACACAGCCTGGGGAGACTTCAGAAACCACAGGTCACAGTGCAATCTGAAAGGGACTTTAAGTGTGTATAAAATGTTCTATGAAATAAATAAGGACTGGAGAATAGAAACCGTAAGGCAATGGTAGACATTATCAAAGTAGAGGAGATTATTACTTAATAATAATTAAGTAATAATCTGAATAATAAATCTCTCTTCTTTATGATTACTTAACAACAGGGTTATTACAACATACAGATGCCAGTATTTTCTTTTGAACAAATTTTAGTCATTGGAATTGTGTAACCACAGTCTGTACTTTCACTTGAAATAGGAATGGAATTTGCCAGTATTGACAAATGCAATAGCCAAATAATACTATGTAAGCTTAGTAAACATTCTTTTCCCTTAAG
Seq C2 exon
GAAATCTGACAAAACACATGAAGTCCAAGACACATAGCAAGAAATGTCTGGATTTAGGCGTCTCAGTAGGTTTAATAGATGAACAAGATACAGAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001252:ENSBTAT00000001655:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]