RnoINT0070914 @ rn6
Intron Retention
Gene
ENSRNOG00000014460 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:RGD Symbol;Acc:727847]
Coordinates
chr17:22299437-22303211:-
Coord C1 exon
chr17:22303043-22303211
Coord A exon
chr17:22299539-22303042
Coord C2 exon
chr17:22299437-22299538
Length
3504 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
ACATACTCTTTCCCCTTAAGGAA
3' ss Score
8.19
Exon sequences
Seq C1 exon
TCAAATGAGGACTATGTATATGTCCGAGGCAGGGGCAGAGGAAAGTACATTTGTGAAGAATGTGGAATCCGTTGTAAGAAACCCAGTATGTTAAAGAAGCACATCCGAACCCACACTGATGTTCGCCCCTACCATTGCACTTACTGCAACTTCTCCTTCAAGACCAAAG
Seq A exon
GTATGAGATGCATGCGCATGGCTCTGGTTCCTGCATGACTTCACACAGGAGCGCCAGTGACTAAGAAGCTTCCACAGACTGATACAGCTTCCAGCACTGGAGCATTTGTTCTTTCTGTCACTAGACGCTTTAAGGAAAATGCTTTGTTACAGTAACATTTTGAAAGGATTAACTGTTTCTTTTTACAGTTTATTCTCCAAATCATAGTTCCATAACAATAGATAACATATTTTCAAAGTGCACACCTTGGGACTGAAGAAGAAAAAGAAACTTTTGTGACCACAAGTAAATTCATTTGAGTTAAAAAAAAATTCAAGAAGGATTTTAAATAATAACAGAATAAATTTTATAGTCACTCATTTTATTTTCTGATTTTAGCCACAAATAGCCATCTTTTAAAATAGAGCTTAACTGTTTATATTAAATTATATTAAATTTCAGATTTAAAATTTTTAAACATTTCTACTACTGAGAATTAGTCATTAAAATTATATTTAGCATGCTTCTCCTTATTATTTAAAGTGTAAGGCCTAGTGATGAAGCACTTTTAGTTTTCATGGTTTTTATGTTAATCACGACGGCTATAGTAGTTAAGGCATTACTTCTTGTTTACGGGTCATTATGTAACGAGTCTTTAAAGATGGCAGGTTCCCATACTGTCCGTTACAAAGTAGGGCTTTCTTCAGCAAAGCAGTCTATTCATGGGGATATCTGACTTAAATGGCAGTATCTGTAAAAAATGGTGATTTTATCGAAACTATCTGTGTTCCTTTTGAGCTCACATTTCCTGTGTTGTTGTTTGGTTATCTTTGTGGTTCTCTGGTAAAGACGAATCATCTCTTTAGCCAATTTTGCTGGGTTTCTGGCTCAGATTTATTGGCATTTAAAGAAAGTTACAGCTGTCACAACTGAGTGCCTTTCCATGAGCTCAGACATCAGTGGTGCCTGGGAAAGGAACAGAGAGAGACAAAGTATGCTTCAGAGAGCTGTGAGCAGTTCTGCAGTTTCAAGTAAGCCCAAAGTAGGGCTTTCTTCAGCAAAGCAGTCTATTCATGGGGATATCTGACTTAAATGGCAGTATCTGTAAAAAATGGTGATTTTATCGAAACTATCTGTGTTCCTTTTGAGCTCACATTTCCTGTGTTGTTGTTTGGTTATCTTTGTGGTTCTCTGGTAAAGACGAATCATCTCTTTAGCCAATTTTGCTGGGTTTCTGGCTCAGATTTATTGGCATTTAAAGAAAGTTACAGCTGTCACAACTGAGTGCCTTTCCATGAGCTCAGACATCAGTGGTGCCTGGGAAAGGAACAGAGAGAGACAAAGTATGCTTCAGAGAGCTGTGAGCAGTTCTGCAGTTTCAAGTAAGCCCTGGGGTGAGAGGAGTGCTCAGTTAAGGGCTCTATGCTCGGGCCTGTAGGCCCTCCTTCCCCTCAAGGTGGGCGGAGGAGGAAGTAGTCAGCCTGATTCCTCAGTACTTCCTCAAAATGGACTCCTCTAACCAATTTACTGCTCTCTCATTGGTGTGATTGAGGAAGGACCTGTTAACTAGGGACATGAGAACAGGACACGTTTAAAAGGCTAATGTCTTGAGAAAGCATTACCATGTACATAAGCATGTACATAACCATGTACATAACAATGTTATAAAGAGATTGAGGTGCAGCATGAAATGAGTGTACCCAACACATGTAGGTGCATAGTTTTCTTTTTGACTATTTAAGGAGTTGATTGATAGTAATAGACTAGGGGGAAAGTAGATTGGGGGAATATAAAACTTAAATTCGCAAATTCACTCCAGCACAGTCAGAGATTCATTTCTAAGCATGGACCTGGCCATTTGTCTGAGGAGCCAAAGCTTTTGAAAGTGAACTACTAATGAGCCTTGAGTTTATCTACGCATGCTGGCACTTCTATGAAAGCATTCTGACCTACAAATGGAGACTTCTGCCACAGCAAGGTGGCTTTTAACCATTTGTTTATTTACTTTTCACATTTTAATGCGAAAACTTTGAAGCTCTTACAAGAAGGAGAGATTTATATAACAAATGCCTGTGTATCTTAATGCCTCTTACCATTCTGCCTTAATTTCCAGTGGAATGACAATGTCAGCCGCGGGCGGGCGGGCAGGCGGGCAGGCGGGCAGGCCGCCGTTTAAGCCTTATCTGTTGGATCACCTGGCTGCAGTCAGCAGTGATGCCTCTTACCGTCCTGTGCTTCAGAAGCGTCTCAGACATGGACTTCTTAAGCACTTGGCTTTGGGGTACTGCTTGGTTGTTTGACAAGAATATACTGGGTATTACCAGAATTGACATCTGCACTTGTGACCAGCTTCTCAAACTATGCATTTATCAAGGAATTGAAGCTGTGTAAATCCAACAGATGTGCTTGGGCTTCTAGTACAAGCCAACATTTGGAACAGAGATTCCAAAATTTTCAGCATTTCTGATCTGTTCCTGCCCTCCAAATTCAGTATTTAATATTGATCTGTGTTTTCTCAAAAGAGATGGTGTACTCTTGTTGACAGTGTTTTGGGGTGTAGCCTCATCTACTCAGGGTGACTGGGGTCCTCAGGGGAGTCTCAGCAGCTCCATGACATCGTTGGTCACTGCAGGCAGGTGTGCCCCGTGAACCTGTGACACTCACACAGAGGAGCATGTCAGCCGACAGAACAGCTTAGAGCTTATAGCCCAGAGCTTCTCCAGACACCTTTGCTCAGCACATAAAGTGCAAGTGCTGAGCTTGTCAGCTCTTCTGTGCCACACACAGTGCTGGTTACGATGCTAAACGGCGACCAGAATCTCATCAATGGCACAGACTTTAGAGCCCTACATGCTCAGGTACCGGAGTGAAGGAGAAACCAAAAGCGAGCCAGGTAGGGGTCATTAGGACCTCATAGGGGAGCCAAGGCAATATCATGCCAGGGGTCTGCGATTGTCCTGCCTGTCAGGTGATCCTGACGTCCACCTGACCCCCCTTTCCACGAGCATTTGAAATTAATGAAATAGTTGAGGTTTCGAGCAGAAAACTTATAAGAGATGCTTCTATAACTTGGACTCCTTAGGATTCATTAGATCCTTAGAACATCGTAGTACTAAAGGTGAACTAAAAATTGAAATGAGAACACACACAGGAAAGTGATCTACTATGAGAGCAAACCAGTTATCAGTTACATTCCAGTAATGTAGGTCAGACGCACTCTGAAAGAGACAGAGTGGGCATGCTCTTAAGAAATAAGAACTGGAGAGTACGCCTCCAACGGGCAAAAAGTTATAATCAAATTAGACAAGGCAGATTTGGAAACAGAATGCCATCATTAGTTAATACAAAGGTCATTGCAACTTACCATAAATACCAGTGGTTTTAATACACAGTTTTAGTTGTTGGGATTGTCTAACCACAGTGTAGCCTTTTGTTTGAAGTAAGAATAGAATTTTCCAGAACTGACAAATGAAATAGCAGAATACCACTACTATACAAGGTTAATACATACTCTTTCCCCTTAAG
Seq C2 exon
GAAATCTGACAAAACACATGAAGTCCAAGGCACATAGCAAGAAGTGTGTGGATTTAGGCATCTCAGTGGGCTTGATAGATGAGCAGGACACAGAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014460:ENSRNOT00000019389:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=45.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]