MmuINT0077935 @ mm10
Intron Retention
Gene
ENSMUSG00000021366 | Hivep1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:MGI Symbol;Acc:MGI:96100]
Coordinates
chr13:42164217-42167663:+
Coord C1 exon
chr13:42164217-42164392
Coord A exon
chr13:42164393-42167561
Coord C2 exon
chr13:42167562-42167663
Length
3169 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AGACACTCTTTCCCCTCAAGGAA
3' ss Score
5.72
Exon sequences
Seq C1 exon
ATACAAGTCAAATGAGGATTACGTGTATGTCCGAGGCAGGGGAAGAGGAAAGTACATTTGTGAAGAGTGTGGAATACGTTGTAAGAAGCCTAGTATGTTGAAGAAGCACATCCGAACCCACACAGATGTCCGCCCCTACCACTGCTCTTACTGTAACTTCTCCTTCAAGACGAAAG
Seq A exon
GTATGAGCTGCGCATCGCTGCGGTCCTCCTGTGTGCCTTTAAATGGGAGAGCCAGTGCTGTGTAGTCGGAGGATAAGCCGCTGCCACAGGCTAAGTTACATCTTTCAGCACTGGAGTATGCATGTATGTGTTCTTTATGTTTCTAGACCCTTTAAGGAAAGTACTTCTAATGACAGGGTTTTAGAAAATACAGAAGTAAGAGTAACATTTAAAAGGGATTAACTGTTTCTTTTTATATTTTACTTCCCAAATCATAGTTCCATAACAATAGCTAACATGTTTTCAAAATATGTACTTTGGAATTGAAGGAGAGAAAGAAATGTTTGTGATCACAAGTAAATTCATTAGAGTTCAAAAAGATTCGAGACAGATTTTAAATAATAATCAGAATGAATTTTATAGTCACTCATTTTACTATCTTATTTTAGCCACAGATAGCCATCTTTTATGATAAAGTTTAACCTAATTATATTAAATTATACTAAATTTTAAATTTAAATTCTTAAACATTTCTATTACTAAATGTTGTTAATGGGCTTTCAGAATTAGTAATATATATATTTAGCATGCTTCTGTTTTATGTTTATTTAAAGCCCAAGCCCTCATGATGAAACAATTTTACCTTTTATGGGTTTCCTGTTATGCATAATGGCTACAGTAGTATAAAGCATTTGCTTTTTGTTCACAGGTCATTATGTGACAAGTCATTAAAGATGGTGCTTTTGTATCCTATTCTTTATGAAGTAGGACTTCCTTTAGCCAAGCAATCTATTCCTGGGGATAGCTGACTTCAATGGCAGTGTCTATTTAAAAAATGGTCATTTTATGAAACTGTGCTCCTTTGAGTTCACATTTGTCTTTTTGGTAGTGCTGGTTATCTTTGTGGTTTTCTGGTAAAGACTAATCATTTCTTTAGCCAGTTTTGCTGCAGTTCTGGCTCAGATTTATTGGCATTTAAAGAAAGTTACAGCTGTCACAACTGAATGCTTTTCTGAGCGCTCAGACATCAGTAGTATCTGGGAAAGGATCACCAAAACAAAGTGTGCTTCAGAAAGCTCTGAGCTTCTAGAGAGTTCCAGGCAGGCCCTCGGGGCAGAGGAGCCTGCAGTTCTGGGCTCTCTGCTAGGTCTGTAGGCCCTTCTTCCCTTCAGGGTGGGCTAAGGGGAAAGTAGTCAGCCTGAGTCCTCAGGATTGCCTCAAAATGGAGTCTTGTAACCATGACTGCTGTGCCATTGCTGTGGCACTGTGATTTGGGAAGGATCTGTTACCTTGGGACGTGAGAACAGGACATGTTTAAAAAGCTAACGTAGGAAGAAAGCAAAGCCATGTATATCACCATCTTACAGAGGAGATTGCGGTGTGACATGGAATGAGTGTGTCCTACACATGTAGACGCATAGTTTCCTTTTAATTACTTAAGGAGTTGATTGATAGTAATAGGTTATGATGTAATATAGATATTAAAAACTTAAATTCCCAAGTTCACTCAGGCACAGTTGTAGAGTAGTTTCTTAGTACAGACCTTGCTCCGTCTAAGGAACCAAAGCTTGTGAAAGCGAACTCCTAGTGAGCCTTTAATTTACCTAAGCATGCTGGTACTTCTATGAAAGCGTATTGACTTACAAATGGAGGCCAAGGCCACTGCAAGAAGGCTTTTAACCAGCTATTTATTTATTTATTTATTTATTTATTTACATTTTAGTGTGAAAACTTTGAAGCTCTTACAGGAAGTAGAGATTTATATAACAAATTTCTGTGTGTCTTAATGACTCTTACCACTCTGCCTTAGTTTTCAGTGTGGTGTAAATGTCAGCCGCAGGCAGACCGGCTGAGGCCTGTGTTATCTGTCGGATCCACCTGGCTGCAGTCAGCAGTGATGCCTCTTAGCGAATCTGTGCTTCAGAAGCATCTTAGACTTCTTAAGCACTTGGCTTTGGGGTGCTGTGTGGTTGTTTGACAAGAATATACCGGATATTGCCAGAATTGGCATATACAGTTGTGACCAACTTCTCAAACTATGCATTTATCAAGGAATTGAAGCTGTGTGAATCCAACAGATTTGCATGGCTTTCTAGTACAAGCCCAACATTTGGAACAAAGAGTCCAACATTTTCAGCATTTCCGGTTTGTTCCTGTCCCCCAAATTGAATATTTAAATGTTGTGCTGTGTTTACTCTTGCTGACAGGGTTTTGAGGTATAGCATCATCCACTCAGGATGACTGGGGTTCTCAGGAGAGTCTGAGCAGCTCCGTGTCATCCTTGGTCACTCCAGGCAGTGTGCCCTGTGAACCTGTGATATTCACACAGGGGGCCATGCCAGCTGACATAGCAGATAGCCTACAGTTCTCCAGACACATTTGCTTAGCATGTGAAGGGAAAGTGCTGAGCTTGTCAGCTACTCTGTGCCATACACAGTGCAGTTTACAATGCTAAAAAGCAACCCAGAATAGTCATCAAACATTTAAACTTTAGAACCATAAGTGCCCAGGTGCCAGAAATGAAGGAGAAACTAAAAACTAGCAAGGTAGGGGATCATTCAAACATCATAGTGGAGCCAAGGCAATACTCATACCAATGGGTCTGGATGGCACTGCCTGCCAGGTGCTCCTGAAGTACGCCTGCCTGACCGTCCTTTCCAGTGACGTTGGGTCACATAGGAAATAAGCATTTGAAATTAATGAAATAGTTATGGTTTCAGGCAGAAAACTTATAAGAGATGCTTCTATAACTTGGAATCCTTAGAACACTTTACTGAAGATGGACTAAAAATTAAAATGAGAATATATACAGGAAAGTTATCTACTGTGAGAGCATGCCAGCAACACAACTAATGGATTGCTTACATGCCAGTAAGTGCAGGTCAGACGCACTCTGAAAGAGACACAGAGTGGGCATGTGCTTAGGAAATAAGAACTGGAGAATACGCCTCCAACGGGAAAAAGTAGCTACCATTAAAAGAGACAAGGCAGATTTGAAAACAGAATGCCAGTTAGTACAAAGGTCATTGCAAAGGTTATACCAGTGGTTTTTATATACAGTTTTAGTTGTTGAGATTGTCTAGCCATAGTCAGTGTAGCTGTTTCCTTGAAGAATAGAATTTTCCAGAGCTGATGAATGAAATAGCCGAGCACCACTCCATAAGTTTAATAGACACTCTTTCCCCTCAAG
Seq C2 exon
GAAACCTGACAAAACACATGAAGTCCAAGGCGCACAGTAAGAAGTGTGTGGATTTAGGCGTCTCGGTGGGCTTGATAGACGAGCAGGACACAGAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021366:ENSMUST00000060148:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types