HsaINT0076318 @ hg19
Intron Retention
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:4920]
Coordinates
chr6:12131000-12136125:+
Coord C1 exon
chr6:12131000-12131175
Coord A exon
chr6:12131176-12136023
Coord C2 exon
chr6:12136024-12136125
Length
4848 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
AAACATTCTTTTCCCTTAAGGAA
3' ss Score
6.61
Exon sequences
Seq C1 exon
ATATAAGTCAAATGAAGAGTATGTATATGTCCGAGGCAGGGGAAGAGGAAAATACATTTGTGAAGAATGTGGAATACGTTGTAAGAAACCTAGCATGTTAAAGAAACACATACGAACCCATACAGATGTCCGCCCCTACCACTGCACTTACTGTAACTTCTCCTTTAAGACTAAAG
Seq A exon
GTATGAGATGCACATTGCTTCAAGGTCCTTTTAATATGTATTTAGGTGGGAAAGCTAAAACCCAACTGTGCGTTTTCTTTGACCGATGAAATAGCAGCTTAAATAGACTAATGTCAATTACATCTTGTCAATGTTGTAGTCTTATTACTTTATATGATTTTAGACCCATTGGGAAAAGTTTTTAATTGTACACTTTTAGAATAAATATATAATAAATATAATATTTTTAAAAGAGCAACTGCCCTTTTTAAAAAACTTAACTCCTTAAATTGCAGTTGTACAACATGATGACTAATATACCTTTTCAAGAATATTTAATTTGGGGCTGAAGAATAAAAAGAAATTTTCATGATCACAAGTAAATTCGCTGGGTGCTAAAAGATTGAAGAAAGATTTAAAATAATAACTACAGTAAACTTCTATAATAATTACACTTCTGTTTTATTGTCTGATTTTAGGAATACATAGCCATTTTTTTTCACAATGCTTTTTTTTACATAAATACTGTTAAATTTTAGCTTCAAAAATTTTCTATAGTTTCTATTAATGTTTATAAAGAAGTCTCAGAACTAATCATTAAAATTATATTTAGGACCCTTTCTGGTTTTTTAAATATGTTTTTATTTATAAGCCTCACTCATAGTTAATTTTGCCCTGTACAAGTTTCTTGATACATATAATAGGTATACTACTTTAAATGTTTGCTTCCTCCGTCAGGCTCCTTATTCATGAACAATTTATTACTTGAGATTTTAATTTTATATGCCACTCTCTAAAAACCAAAGATCTCTCTTTAACAAAGCAAGGTAATCGTGAAAACATGTCTGAGAAAACAGTAAAAAAAAAAAAAAAAAAAAAAAAAATTAATTGATTTTTAAAAATAGAAACAACTTTTATCCTTTGAGTTAACATTTACTTTTTTCTTATGCTGGTTGTCTTTGCAGTTTTTGTTTTAAAGATTGATCAACTTCTTAGCAAAATTTATTACATTTTTTGGCTAGTATTTATGGGCATTTAAAGAGAGTTATAACTTGTAACAACTACATGCTTCAAATTAGTACTCTTTAAGTGCCAGTGGTGTCTGAAACAAGAATGATGGAAAAACAAAATATTCTTCATATGGCTTTGAATATTTCAAAAAAGTTTCAAGAAATGAGAGAGGTTGGGAGGGATACTCAGGATGCAGTTTTTTAATTGTGATGTAGAACCTCCCTCTGTCATTGGAGGGTGAGTTTAAGGATGATTTTCCTTCCTGGTCCTGAGGGAGGACTCTGATAGGGTAAAGTACTTTGGTCTTTTAACTGAATTTATTGCTTTTTCACTCATTTTGATCCTATGATTAAGAAACATCTATTAGCTTCCTTTATGAGACAAGAAGCATATTTAGAAAGCTAATATTACTAATAAAAGATTATCATGTACAAAAGGATGTTATCAAATACAAGAAGATCAAGATACAATGGGAAATGGGTATTTCTCAATAGAAAGAAGAAAAAGAATGAGGCTATTTAAAAAATATTTATCAAGTAAGGGCAAAAAAGGAAGGACAACCTAGATGTGGTAAACCAAATGAAACTACAGAGATTTCTTGGCAAGGAAAAATATGATGAGTCACAAATATTAATCTTAGTGAAATTAACTCGAAGATTTTAGATAAATGTTAACTAAATGGTGGACAGTCCATAATGACCCCTGAAGAGTGAGCATTGCCTGTTAGCACTTTTCATGTCTTACACATCTCTAATATGCTGTATATCTGAATTTGCATTAAATTTGTTGTTTTGTAAGATGTCATGTGGAATTATATGGTAAATATTTATTTGAAGGAGGCTATCCTTGCTAAGGAGACTGGTGAAGAAAATGTTAGAAATTCAGGATTTCCCTTTTCTTGGCATGACACTTCTCTTTTTTTTACGGTCAGCTTCCTTTTTGAAGTCTACTTTTTGTGAATCTATGTAAAACAGATTCCACAGCACCTTTTAAAGGTAGTTAAATAATAGTAGACCTTTTTTTGAATTATGCCCCAGATTTTCACCTTCTCTGATTTACTTGCTATACTAGCCAGTAGGACTCCACTTATTATTGAAAGTGTCGGGTTACTAACAGAAGGAAATAGTGATGTGATGGCATGCTGTATAAATATGGTATGCAAAGACAGCAAAACGCTCTCAGAAAAATGATCTGTAGAGCTAAAAATTGATGCTTCTGATGGTAATGCTTACAAATCCATAATTCATTATTTGCCCTCTGAGTTTATTTTGTGAGTACATTTTCAAAATAATTTTAATTGATTTGTTTTCATGATTCTACGTTAAAGGTCAGTCAGCAGAAAACATATAGAGAGCTTGTATCTCTGCAAGATTTAGTCTCATTTATATCACAGAAAATTAGACTGCATGTAGCTCTAGGAGTCAAGAAACAAAACCTCTCATGCTTTCCAGAGGATTCAGATAAATGTTTATTAAATCTATCAGAAAAATTATTTATTAAATTAACACCAGGTTTATAAAATTGCTAGGAGATATTTGCATTTCAATATGGGCACACTTTCAATATTTTGTATATTGAAATGCAGATTTTTGTTTATTTTACATTAGGAAGTTGATTCATAATAAGTAATAGCTAAAGTTATGAGAAAATATGCTTACTAAAAACTTATATTTCTGAATTTGTCTAGTTACAATTATACATTAGTTTCTTAAAAAGTAAATAACCTGCAATGGCTGTCTATCTAGGGAGCAAAAACATTTTAAAAGAGGGCCAGGTGCGGTGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCAGATTGCCTGAGGTCAGGAGATTGAGCCTGGGCAACATGGTGAAACCCCGTCTTAACTAAAATACAAAAAATTAGCCTGGCGCAGTGGCAGGCGCCTGTAATCCCAGCTACCTGGGAGGCTGAGGCAAAAGAATGGCTTGAACCCGGGAGATGGAGGTTGCAGTGAGCTGAGATCTCGCCACTGCACTCCAGCCTGGGCAACAGTAAGACTCCGTCTCAACCAAAAAAAAAAAAAAGAGGACTATAGTGGACCTTATAATTTGGTTTGTAATATTGTTAGTATTAACACACTGAAAACATTTTGACTTACAAGTGGAAATTTCAACCACAGTAAGATATCTAAACCATTTTTATAATTTCTTAATGTGAAAACTTTAAAGCTGTCACATAAAAGTAGAGATCTGTATAATGAACACCATTGTGTGCATAATCTTTTAATAATTGCTAAGATTTTGCCATATTTGCTTCATATTTTTTTCAGTATATTTAATGTAAATATCAGAGATAGCCAAGTGTTAATCCAGGTGTTATCTCCAGAATCACAGAAGTCAGGGTTTGATGGACCTTAGCCATCATCTGGTCTCGGCATCCTCTTAAGCCTGACCTCCTTAAGTACTAAGCTCTGGGGTCCTGCGTGGTTGGCTGAGACAAGAATGTACTATGTAGTGCAAGAATCAGCTTGTACAGGGATGACCAGTTTCACAGGCTTAGTGCATTTATCAGGAAATTGAATAGATATAGCTATTTTCCATGTGCTTCGGCTACTGCAAGCCCGAAATTTGGACCAATGATTCAGACATTTTGAGCTCTTCTAAAGACTTATTCTCAAATACTACTTTGCCTCTGCCCACTAAATTCAACATTTAGAGTTGTTTTTGTTTCTCAAAAAAGATGACTTGCCCTTGTTGGCAATGCTTTTGTGTATGGCATTATCCACTGGAGATGCTTGTTATCCTCAGAAGAATATGAGCTGTTTCCCCTGGATTCAGTGATCACTTGAGGCAGGTGTGCTAGTGGTTCTCAGCTAGCATGGTCATACTTAAAGAGGTCGATACAACAGCTGCCAGAGGAAACACTCCTTTACTGGTACTATTTTGAGACTTATACTCTGTATGTGAAATGAAATTAATACAGGAAATGCTTTCTCTTATTCCAGAAATACTGTTTATAAAATTACAATGACCCAAAATAGTTTTTCATAGTCAAGCTTGAAACTTTAAAAGGTGAATTCCAAGGTACCAGAAAAAAGAAGCTCAAAGCTAACATGGTGAACAGATACTAACAAAAAAATTAAAAGGCCTTATGGGAATCGAGGCCAGATATATGCCTACAGGCTTACCTGTCCTGAGATAGCATCTGAGGTTCCTGAAATAAGCCTAGTCCTCCTGTCCAGTGACTTTGGGCCATGTGGGAAAAACCCTAACCGCTTAAAAGTAAAACCCTATATCTATACCATGCAAAAACAAACAAAAAAACTGGCCCAGAGTCAGTTGTCTGAAGCCAATGAAACTGTTAAGGTCCCAGGCAGAAGCAATTGGAAAACTGCTTTATAGAGATGTTTCTGCAACCCAGGGTACTTAGGATTCCATGGAAAACAATCTTGCTGAGGATAAACTTACAATTAAAAGTAAAAAGCATGCAAAGAAACAAATGAGAAAGAGCCAGCAGTCATAACAAGTGGAGAATTCACACTCCAAGAACTACAGATCATAGTGTAGTCTGAACGGGACTTTAAATTAAGTATGTATAAAATGTCCCAAGAAATAAATAAGGATTAGAGAATAGAAAACATAAGGTAAAGGAGATGTTATCAAAGTAGAGGAGGCAGATTTTAAAAAGAAAATATAAACTGATAAATAACAAGGTATTAGAACATATAGATACCAAATTTTCTTTTGTTCACATTTTAGTCATTGGAGTTGTACGACCACAATCTGTACTTTTGCTTGAATAGGAATGAAATTTGCCAGTGTTTACAAATGCAATAGCAAAATCATACTACTTAAGCTTAGTAAACATTCTTTTCCCTTAAG
Seq C2 exon
GAAATCTGACAAAACACATGAAGTCCAAGGCACATAGCAAGAAATGTGTGGATTTAGGCGTCTCAGTAGGTTTAATAGATGAACAGGATACAGAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951-HIVEP1:NM_002114:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)