GgaINT0091526 @ galGal4
Intron Retention
Gene
ENSGALG00000012739 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr2:62807170-62809889:-
Coord C1 exon
chr2:62809714-62809889
Coord A exon
chr2:62807275-62809713
Coord C2 exon
chr2:62807170-62807274
Length
2439 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
GCTTTTATTTGTTTCCTAAGGAA
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTACAAATCAAATGAAGACTATGTGTATGTTCGGGGGAGAGGAAGAGGGAAATATATCTGTGAAGAATGTGGAATACGTTGCAAGAAGCCTAGTATGCTGAAGAAGCATATTCGCACACATACAGATGTCCGTCCTTATCATTGCAATTACTGCAACTTCTCCTTCAAAACTAAAG
Seq A exon
GTAGAGGCACTTCTATGTGTACATTTTTTCCCTGTTCCTTCTGTGTTAAAGCACAGTTCTTCTCAAATCTGGCTGCCCATATACTGAAGAAGTTACCTTGCTGTGGAGTTTTATTGTCTAATGTTTTCCAGTGTTTGCAGTCCCTTCTGTCTGCTTGTTCAGATAATCATGTATTTATATGAATAAACTGTGTGGCATCTCGTGGTAGGTTAGAAACTGAAATGGAAAAGGAAGATCTGGGAGTATGGTGAAAGCTAGGTCTCGTCCTAAGCAAAGACAGGAACACAGTTTTAAGTCCACACTGATTATTTGGACATATGACATGGGCATATTTTGTGCTCCTATTAGCACACAACAAACTACTGTATTAAAATGGTTTTTAGACCCTGGAAGAATGGAGTTTGTTTTCCTCCTTAATCTTCTAAGACCCAAAGATGGTGTTTAAAGTCTGTTTACAACAGTGCTTACAAATTTAAATATATATGTTAAACAATGATAGATCCAGGACTTGTAATAAATAGAAGAGGTAGGGTATACTCACAGCCAAAAGACTTTCAGTGAAAAGTTCTAAGCAGTCACGTTTTTCTCAGCTTAGAACATCATGCAGGTATAATCTCCCCAGCTATAACCTCAGGAACATTGGTACTTACAGTGGGTTTGAGACTACTCAGCATTTAGGTAGAAAACTTCACAGGACTGCAAAAAATAGGATTGACAGTCTTCAGATGCGTGATGAACTAACATTGCCTCCTTACACCTTAGGGCATGATGTTGCTTTGTTGCACCATCTTTAAAATTAAATGCTGGATTGTGAACACAGTACATTCTGATGAGGATTTTTTGCATAGTAGGCTTTCTGGCCCAATTCCATTAATTAAGCTCTGCCCATTTAAAATTCTCACATGCTTCAGTTGTAGAAGGTGCTTGTACTTGCTTCATGTTCTGCAGTTGCTAACCATGACTGTTGCCACTGCTAGCAAAGTTGGACCTAGAGCTGGATGCTTGAAGTTTGATAAACTACCCCTTATGAAAAGACAGTGTAGGCAGTAATTTCATACAGCATGTAAGGCCAAGAATTTTGCTATTTGTGAGCCAATAGCAATGCCACGTAGCTTCATAACAATCATTTCAAAATTTGGAGTGAAATCCTAGTCTTCTTTCAAAGTAGGAATTAAATATTCCACAGCTATAGAAGCATTTCACCCACTATAATTTCTTCCATTTGAATACCTCAAAGAAACTGGATATTGTAAGATAATGTTAAGTCTGAAGTAGACTGCTACTTGTAATAATATGCATAGATTGCCCCGAAAGTAATGTCTCCTATTCATTGCCATGGAAACTACAAAAGATGCAAAGAGCACAGCCACACTATTTAATAGAGCAAATTCTCAGCTACAAAACACTGTTTTTCAACAGTCACCACCATTAGCTATGCATTTTTGCCAGTGACCAACAAGAGCCTGCATGTTGCACTCATAACAATCTGTGCCTGCAGAGGTGACCCACTGTCACCACTGCTGAAACACACCACCGTTTCGTCTCCATAAAGGTTCACTAAGCATTGAAGAATGTCAGTGGATGCCATTCATCCTCATGGAGGAATTCATTGACACACCTTCGCTTCATCTGCACTCCCACGTCAGTTGTCATTTTGTTAGGCTGCCCCTTTGCTGCCATCTGTCACATGGCAGGAAAATGTAATGGGATATCGGTGGGAATTCTGGTTCAAATTCTACTGCTGTACCACCAATGTTGTGGGCCAACAGAATAAAATAGGAGGCATTACTTTTGGAGTAGTCCTCATACATTTCACATATTCATCATTTTAAACTCTGTGGTCTACTTTTAACTTTTTCTTGGTGATATTTGCCATACTTTCTTTCTAAAGGAACAGGGAATAGCAACTCATGAAGCTTCCCAAGAGTTATGCATTCGCTTTTGAAATTCAGAGCAAATATTTTCGGGTTCATACTTTGAATAAAATTCATGTGTTTGTTTAAGTTGGCAATTGAAATAATTACACTGAAATAGAATCCATAAAATACTAAAAGAATTGCAAGATATGAACTGTAGTTCCACACAGTCGTTTTCTGTCAGTATTATTTTGAAGACTGGATTAGTCTTTCATATTTGACAGAAACAAAAGACTTTTTTACACATATGCAAAATGCATAATCTTCTATTATTTCCATTTTATTCTTTTTTTTAATCTTTGTGAAGAGCTGAGCTAGCTGAACCAATGCAAGTAGCATTCAGGATGATGAACCTGGTGTAGCCCTTGTCAACTTACATTGAAGGGCAAGGCCAGATGTAAAATCAAATTATACACATGGTTGTAAACGTAGTTGAATGAGATATGGACATGCTGTGTTTATATCACCATACATTTGTGTAGTCAAAGAGCAGTTCATTTTTTGCTTTTATTTGTTTCCTAAG
Seq C2 exon
GAAATTTGACAAAACATATGAAGTCAAAGGCACATAGCAAGAAGTGCATGGATTTGGGAGTCTCGGTAGGCTTAATAGATGACCAGGATGGAGAAGAAGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012739:ENSGALT00000020790:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.160
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]