BtaINT0072279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020745 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr3:105254482-105261072:+
Coord C1 exon
chr3:105254482-105254657
Coord A exon
chr3:105254658-105260985
Coord C2 exon
chr3:105260986-105261072
Length
6328 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGTTCTCATTCCTTTCCAGGGA
3' ss Score
11.6
Exon sequences
Seq C1 exon
GTACAAATCAAACGAAGAGTATGTATATGTGCGAGGCCGCGGCCGAGGGAAATATGTTTGTGAGGAGTGTGGAATTCGCTGCAAGAAGCCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGGCCCTATGTGTGCAAGCACTGTCACTTTGCTTTTAAAACCAAAG
Seq A exon
GTAAGAGACGGTCAGCGGAGCGCTGGCCCTGCCCGCTGCAGGGAGCTCCCCTCTGGGAGCTCCAGCACAGAGCCCGAGGCCTGGACCTCTCTGCCTGGGGCCTGAGCAGCCCTGATTTCCGGGCTCCCCAGTTACAGAGCAGCCCACTGCAGACGGGGCAGTGGCACCGTCGGCTGCCCAGCCTGTCCTCTTAGATCTCACACTGGCCCCGTCCACCCTCCACCTATGCGATTCCCACCACGGCCAGGCAGTGGCACTCCAGCGCACAGCTCCTGGTTTTGTATTTGATCTCATCACCCTGCTTCCTTTTGCATGTCTCCTTAGCCCTTTATCCACCGACCTGATGAGTTCCAGCATCCACACTGGTCACTGCCACTCTTGAGTTTGGAAATCCATTCCACCCTGAGCCACTTAACACACTTGCATGGTCACTTCTCATGCCAGACTTTGCCTCCACCTCGCCTCACCACTCAGACTGTGTTCCCGCTCCACCCAGCTTCTCCACAGCCCTCAGCACTGGGCCCGGCTCTCCCCTCACCTTGACTGGCAGCCCTGTCATTCTGCCCTGGCCACGCAGCACCTCAGGGTCAGCTCAGGCTCTGGCAGTCACCTGTGAGAAGAAGGCAGACTGGCCAGTGAGGGTATGAATCCAGAGGGCTGTGTTGGATGATGAGGGCAGCCATGGCTGCTGCAGCCACCCAGGACCCAGGCGTGAACCAGTGAGGCTGAGTCTGCGAGGCTTGGACAGAGTGTTTCTCTATCCTCCCACGGGCTGCTCCTACAGGGCAGGAAAGGCATCGTGACCCACTTCTTCTTTCCTGGTAGCCGAGTAGACCAAGGTGCCTCAGAGGGAGGCCTGGGCTCTCAGTAACCCTGGTGGCTTCAGCCTCTTGTGTTTGGCAGATTCCTGGCTCAGGATTTGGGCACGAGGGTCCTGCCTTCCCCTTCGGGCAAGTTGGGGGCCTCCACAACAGCCCCCTCCAGGGCCACGTGGCTTTTCAGTGGATGCAACTTGAGAGCAGGTTCGGCTTTGGTGCCCATTAGCCTTCCTTTTGTGGGTATAGCTGCTCCCAGAGAGAGAGGCTGGGTGGCTTTGAGGAGGCCCCTCCGGACTTTGAGTCTTCCTTCTTCCTCCTCCTGATCCCTTCCATTCTGTCAGTGCTAGGTTGGGGGTCAGTTTATCTCACCCCCTTGCTCACGGCCCCCTCTCTGACTGGGTGCTCATCTCTGATCTGCTGACCCCATTAGCCTGTCCTCCTCTGTCCTCGGCGCCATCATTCCCAAATGGAACTCGAACTTTTCCGCCAAGGTTTTGGTTCGAATACAGGCGACCATCCTCCTTCCTTGCCCTGACCCTCTTCTTTCTTGGTGTCTCATCAACAACAGTCCAGAGGGCCCAGAGAGGACCGACTGGCCTGCAGCCCAGCCATGTGCAGGACAGCTCGCCTAGCAGGCCTAGGTCCTAGTCGTGGGCTCCGTGCCCCACACACCCCCTTCAGCCCCACTTCCTCTGGCCTTAGGGGGCCAGTTGGGACTTTCTGGAGGAGAGAGGTGGAGATTCAACAATTGGATAGCCATTGACCAACAATTCAGATAATGGTCTTTGACTCTGAATGCCAAAAGCTGTTTGTCCAAGCCCCACCATGAAGGGAAAGAAAATGAGTCCCCCCGCCCCTGCCCAAGCCAGAAATGACTGTTAAAGCTGGAGCTGTAACTATCAGCTAGGACCCCTGCCTCTGGGGCATAACCCCCACCACCTTCCTCTCTTCCCCTTGTCTGGACGGACTGGCAAAATCAGGTGGCCTCCAGAGTGGATCACTGCTGGCCCAACTCCCAGGCTGTCCAGCGGACCACACCATTCTGTTCTCAGCGTGACGAGCCCAGTCCTGAGAGTGCCCCCTCCACCGCACCCCCACCCCCACCCAGCCCAGGGCCACACAGAGCTGCCTACCATCTCGGGGAGCCATCATCCTCTATGTGAGACTGGAAAGATCCATTGAGCCAAGTCCCCAGCCAGAGCAGTCTCCCAGAGCAATCTCTATTCAATTCTCTCTGGCTTTATTGAGAGCAAAGGCCTGGTCTTTTTCTGCCAAGTCTGAAAGAGGTCTGGGTCCCTGGCAAGAACACCCCTTTTCCAGGAGATTCCTGCATTGGAAGCCACATAGCTGAGCTATCTGCAGTCCCTTCCTGGGTCCCCCTGAGCCCTGGAGGGTCCAGAGCACACAACCTGCATGGAATGTCAGTGGGCCCTCTGAGTGCCCAGGGGGCGGAGCCTGGGATGAAACCTGGGGGTGGAGCCCTGAAGGCCCCGCCCAGGAGGATTTCCTCTCACCCTGTGATGGGGCATGTGCTGAGCTCTCTGCCAAGGCTCCTAGACCCTTCTGAAAGACAAAAACCTTCCAGAGCCAGAGCAGTGAGTGCATCTGAGATAGTGGAATCTCAAACTCTGGGAGGTAGAAAGGGGCTAGTATGGGCGGTGACAGATGGAAGCAGAGCCAGCTCACTTTGGCTCTCTCTGCATGAGGCAGGAGAGTGAGGGAAGCCATGAGACACTGAAGCTCCCTTGACTCCTCAGACCCTTCAGCCATCAGCCCAGATACCAAAGGAGCTACCCTCCTCTCAGGGCTCCTGCCTCCGTCCAGCTGCCTCCGTCTCCTCCCTCCCCTTGTCCTTGGGCTCAGACTCGCCAGGCTGCATGAGAAATGAAGCTGGGCCCGGTGGTCTTCAGGGCCCTCCGTCGCCACTACCTGGCTGCACCGGCTAGAGAGCCTTCCTGTCCGTCTCTGTCCGCCTGTCTGTGTCTCCGTCTCTGTGTCAGACGTTGTGACAGCAGCTCCGGTCCTGGGTGCTAGCACCGGCTTGTCTCAGTGAGTGAGGCCGGGGAAGGCCCACTGGGATGTCCCTATGGAGGTCTGGGGTCCTGTGTCCTCTTCTGAGAAGGTTCCCCGAGGCCAGCAGAAGGGCTGTGGTGGGTACAGGCCCTTGCGCCGATCGCCTGCGGACAGAGCTGGCAGTTTGGAGCAGCCCTCAGGGGCTGAGGGAGGGTGGTTGGTCAAAGCCCAAAGCCGAATGGGGTAGACACGGTTTTCAGCTTATGCTCTTGGTGGAGGATCCACCTGTGTTCCAGATGCCCATCATTTCCATCCGCTTGCCTTTCCTCCTTCATTCCAGGATGGTCAGATTTGGGGTGAGGGGGCTGGGATGATGTGAAAAGCTGTGAACTCTGCTTGGAAAGCTGAGGCTCTGACCCTTGACAAGGAAATGGTGTCCAGGCCAAAAAAAGACACCTGCAGCCATTTGGTTCACCTCCTTCAATTCACAGAGGAGCAGGCAGGCATACAGAGGGGACACTCAGGGAGGGTGCTGGGTAACACTCAGGGCTGCACATCCGCCCCTATGTCCCCATGGCCTATCCCAGCAGCCACTCAGACTCCCAGCTCCTCCCTGCAGCCTCCGGGGCAGGGGCAGAGGAGAAGCTGGTGTCCAGGGGCTGCCTGGTGCCCTCTCCTGGGATTGCTGAGCCCAGACAGACTGGTGGAGGCATTTACATCTCAGCCATCATCTCAGCATCTCTCTCTCCTCCACAACCAGTGCGTGGCTGTGGCAGAGTCTCCCGGGTGCTCCATGAACACTGACTGTTGGGGCAGGGGGGACACACAGAATGGGAAGGAGGGAGGTTCCACGCAGTGGCATCTGCTCTCTGCCAGGCACGCTCTGCTGCCACTCTACATGCGTTTGTTCGTCCGCTTCTCCCAGCATCCCCATGAGGTAGGTACAACTTTACAGTTGCAGAAACTGGGGCTCAAAAGGTTAAGACACTTGCCCAAGAACACATAGCTAGCAAGCGACAGAGCCCAGACTCAGACCCAAGGCCACCAAGCTCCTACATGTCTTGGTCTGTCCCACCAGTATGGAGCACGCAAGGCACCTGCAGTCCTGAGACCTGGCTCCAGACGGGGCTCTGCGCTAGCTGGCAACGTGGCTTTGGCTGTTTGGTTCTCCGTGATGGTGAACAGGAGCTGTCCCAGAGCATCCCGTCACCTCAGACAGTGGATTATCTCGTCCAGTGGCATCATTAGCACCAAGGCCAGGAGTCAGAACAGAAGCAGGAAGACCCTGGGCCTGGTAGGGGGTGGGTCACATGGTCTGGGAGGTTCCTCCCGACACTTTACTTCTGTGATGAGAAGAACATTTCCCACTCACGGTTATTACGCGCCCTTAGTGTGCTCAGCACCTAACTTGGTTGAGTAAGAGACCCAACCCTTCCGGACAGAACAGGGCCAACAATAATGTCATAGCCAAAATGAGCAGTGTGCATAGTCCCCTGGGGTCTGGGGTATTCAGGGGATGGCAGGCTGGTCTCAGAACCTCAGGGGACGTTTGGTCTCTCTGGCCTATGTAACACTGCAGCTGCCTTGACCGCCCCCTGACATCCTGCTCAGGCTTTGCCTACTCACAACAGTGGGGCCAGAGGCCCATGATGTTGGACAGGGACGTTGGGGGTCCCCCAGCCCTGGGATGACTCTGGAAGTTATGGCTGTGCTCCCCATTTGGCCAGGAGTAGAAGATCCAGTTTTCTGTCCAGTTAAAGGAAGAAAATCTGAGGGAGAGATAGAGTCACAGACCAGGATGAGCAGGAGGGAAGGGGCAGGAAACAGCTCCTCTCCATCACTGCTGCCCTTGACCTGCACACCTCAGGCAGCCTCAGCTTAAGGCTCCTGTTACCTCTGAGCAAAACCTTAAGGTTCCTTAAAATTCTCAGAATAATTAAGAAAAACCCTTTGGTTCATGCATGGGTGCTCTCTCCCTAGTCACCCACCCATCCTCCCGTTGATCCATGTCTCCCATCCTCGCATCCTAAGAGCTTGTCTTCCTCTCGTCTTCCCATCTTCCCCTCTCGTCTGCCTCTCCGCCTCTCTCCTTTGTCCTCCCACCATCCACCCTTCCATCCTGCCCGTCCTTTCATCCCCCTCTATGTCTGCCTTCCCTATTGGGTGTGCTGCCTCCATCCCCCCATCCAACCAGCCCTCTCCCCCTTGCCCAGATCTCCTTCTCTCCCTTTCTCCATCTTCTCATCTGTTTAGGGATCTACTCCCCATCTACCCTTCTATTTATTTTTATCCTCCATCTGTCTGTGCATCTGCTTATCTGCTCATCGAGTATCCCACCCGTCTGTCTGGATTCTCCCTCTTCATCCTGTTTGTCACTCCATATTTCCTCTTACCCACTTATTCATCCATCCATCTATCTGTCCACCAATCGTTCTATGCATCTGTTCCTGGAATCCCTTCTTCTCTTTTCCATCCATCTGTTCAAACCTGGTAATAAGATGAGTGAGACAGAGTTCCTGACTCAAGGGCCTTGTGATGTATTATATGAAGGACCATGGAAATATAGCCATCCCTAGAGCAACAGTGAGCACATCACAGTTGGAGGCGATTGGTGAGCCCAAAGGAACATCGTGAGGCATCTGGCCAGCATCCTGAGGCGAGCTGGGGCTCTCCTGCTGGTCCTTCGCAGAGCGCTCCTGCCCATAGGGCTTTGTGACCTGTGAAGCGCTGTGCACACGTCAGGAAGAATCGGTGTCACAGAGTTTCCCCTGATTCCACAGAGCTTCTGGCTCTGCTCTTCAGCCCACTACGGACAGAGTCAGCCACCCCCCGAGGGCTTTGTAGTCACGGGGAGGACGGAGCCTTTGCTCAGCCTTCCCTGTGCCCACCACCCTTGGCCATGTCTGCATGGCAGTGACTTTGGAGGCCCAGGAAGGGGACATGACTCTCTAAGGAAGTCAGGACTTGGACCCCAGCCTTGTGGCCCCTAGGTCCCTGTCTAGCAGACTTCGCTATGCCGTCTGCCCTTTCTCCATGTCTATTAATAGCAGTAACTTTGTCCTGGTTCCTCCTCCCAAACCCTAAGATCCCTCCCTGTGGGCTGGCCTAGCAGTATCCTCAGCCAGAAGGACATCCTCAGCACCCACTCCCATGCTAGTTCATGGGCTGGGTCCCTGCTCTCATCCCAGCATTTGAAATGGTCAGTAATCCTGTCACCAGCTCCTGGGCCCAGGGTTAAATCAGAAAAACTTTTGCATATGACTTGTCTTTTAATCTCCTTTTGTTTTTTTAACCAGCATCTCACTTCCTCATTATACCCTCTGTCCGCTCACAGCCCCTCACCCACCCTACCCGGCTCCTCTGTACCATCGTGCACGGCGGCCGTGGCTGCACCCCTGACCTGAGCACGCGGGCAGAGTGATGTCCAGGCGCCGCCAGGCGCCACCCTGGCCCCCTGCCCTCCAGCCATGCCTGAGTCTGTTCTCATTCCTTTCCAG
Seq C2 exon
GGAATCTGACTAAGCATATGAAGTCGAAGGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020745:ENSBTAT00000027644:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF065247=NOA36=PU(39.6=98.3),PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
PF065247=NOA36=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]