MmuINT0077951 @ mm10
Intron Retention
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:120122872-120128362:+
Coord C1 exon
chr4:120122872-120123047
Coord A exon
chr4:120123048-120128275
Coord C2 exon
chr4:120128276-120128362
Length
5228 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGTTCTCATTTCTTTCCAGGGA
3' ss Score
11.07
Exon sequences
Seq C1 exon
GTACAAATCAAACGAAGAGTATATATATGTGCGAGGCCGCGGCCGAGGGAGATATGTTTGTGAGGAATGTGGAATTCGCTGCAAGAAGCCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGGCCCTATGTGTGCAAGCACTGTCACTTTGCTTTTAAAACCAAAG
Seq A exon
GTAAGAGACAGTTAGCTGGGGCACCACCTGCCCATGGCAGGGATCCCCCCCTGGGGGAGCCCCAGCACAGAGCCCTCTGCCTAAGGACTGGAGTACCCCCACATCCTGAACCCCCACATCCTGAACTCCCACCCACTTGGTAGCCATGGCAGAGCAGTGTGGCTCCAGACTGATCCGTGATGCCCACAGCTGCCACAGTCACACAAACTCCTGCCCATATTCCGCAGCCTCTAAGTCCACACTTTGTGGTTCTCTGTAGACCTCATCACCCCTTCCTCTGCATGTCTTCATGGCTCTGATGACCTCTGGCATGCACACTTGTCACAGTCACTCTTGCACTAGGGGATCCATTCCACTTGGAGCCACATGACACACTTGCATGTTCACTTTTCCCTATTCCTCCTCACCACACCCAGAGTTCTCTGATCCACCCCTCTTCTCTGCAGCGTTCAGCATAGGGTCCGGCTTCAACCTACCTCCACCCCCATCCTGAGAGTCTATCACTTCAGCTTCCAGCCTTACCCCACATCCCACAGAGTTAGGACAGGGTCTGGCAGTCATTTGTGAGAGGAAGGACTGGCTGTTGAGAGCGTGCATCTCAGAGAGCAATGGCAGGAGATGGTGGCCTGGGCCTGCTATAGTCTTGAGGCCCTGGTGGGATGGACATGCAAGGTTCTTGAATGGGGCACTTCCCTTGTTGGGGGGTCCTATAGCTTGCTTGCAGAGAAAGATGGTGGACCTTGCAAGGAAGCTGGGGTGAGCACCCCAGTGGGTTTTGCCTCTCACACTTTGCCTGTGTTTGGATGTGAGGATCCTGGCTTCTCTTCTGAGTTAACTAGAGGAGGAGTCACCGGGGGCTGCAGAGACAGAACTCAAGGCAGACGTTGGCTTTCCTCTTGTCCTTCCTTCTGAATCTCAGTGGGCAGGGCAACAGCTAAGGACAGGGGGAGCCGAGCCCTCAAGGCTCCTGTTGCCTTCTGCTCTTGCCACTGGGTCAGGAGTGGCTTGTCACTTTCCCAGGCCCAGTGGCCTCTTCCGGCATGCCCCACTACTCATTTCTTCTTGGTAGCAGACCCTGCTCTCCTCTGTCTTCTCACCATCATCTTCGAGCTGAGCACAGTTTCCCACCATGATCTGGAACTGGATGGAGACACCCACCCTTCCACTTCCTTTTCCTGGTCCTCTTCCTTAGCATCTCAGAAGCAGGGTCTCAAAGGGTGCTGAGAAGGCAGTTAGGTGGGATCCTGACCCAAAGCAGCCCAGCTTAGTGCACATGGGTCCTCTGTCCCACGCCCCCATCTGCGGCCTCTCCTTTTCTGGGCTTTTTGTGGAAGAGAGGTGGGAATCGCTGACTGATAACGCAAACAAGAAAGCCCTTAACTCTGAAAGTGGAGAACTTCTCGATTGGGCCAGAAGAGATCCCCAAAGCCCATCAGCCTCTGTCCCAAGGACACAATGCCCTCATCTTCCTCCCTCCACTGGCTGAGGCAACCTCTGGATGACCACAGTGCTCTTCCAGGTATACTGAGCGATAGCATCGTTCTGCCCTCAGCATGAAGAGCCCTGAGGAAGCCTCCACTCTGGGCTACCACAGCGCACATGCACCTGGCCCCAGTCCCCTGAGAAACGCCCACTTACACCTTGGCCTCACTCATTCTGGAAGGTCTGTTTGAGGTGGCAGTTTATCCCCTGGGAACTTTCCCTGGATCTCTGTCTCTGAGCCACCCCAGAGATCCAGACAGTCCTGAGAGTACATCCTGGGGACTGTGGCCTTCACATTTCCAGAGGTACAGGGAGTGCCTTCAGGAGGCTGGGTTTTGTTCTTGGCCAGTGATCAGGAGCAAGCTAAGGTCTTCCTCCCCGGGCCTCTGAGCCCTCTGAGCACATGGAAGTAAGTCTGAAACATGGACTCTCGTACTTCCGGCCCAGCACCGAGTGGGCAGAGTTGATAACAGAGGAGAACAGAGATTCCCCTTGGGCATAGAGTGGGGCGGGAGGCCAGAGTACCCGGCTTTCCTTAGAGCCACATCTCTGAAGCCCTGTCATCCGTCAGTTGTGAGCACCTCCTCTCCTCTCAGGACCTGTCTGTCTGCCTCCTAGCCGGGTCTTGCCCTTGAGTTGTGATTCCAGCCAGGATGTATGGGTACTGGCAGACCTCAATCCGGTGTCTGCACCATCTGGCAATGCCTGTGCCAGGACTCTTCTTGTCTGTCTCTGTCTGCCTGTTTGTGTCTTGTCTTTGTGTCTGTCACACACTCAGGTGGCAGTTTGGTCTCTGGGAACTCTTTGAAGAGGGTCTCATGTGTGAGGCAGGAGGAGGTAGCAGGCTAGCCCTAGGAGAGTCCCTTTCCTCTTTTTAGATTCTTTCTAGAGGCCAGAGGAGTGGCTGAGCTATGGACAAGCCCTTACACTGATCTCCTAGGAGACAGAAGTGGTAGCTGTGGGCAGGCCCTTGTTCAGCCCAGGAGACAAGGTGATGTCTGGTGCTCTTGCTAGAGCCAGCTCCCCTTCCAGACACTTGCTCTTCCAGCCGTCCACTCAACCTCCGCTTCCAGATGCCAGGCTGGTTTGTCCCTGAGGGCTGGGGGCAAGAAAATCCTTGGCTGGGCAAGCCTCCTCCCTGTAGCTTCTACAGGATGTTGACAGGAGCAGGACAGCCTTTGGGGGTTGGGCTCCCTCCTGCCTCTTCAGAGAGCCCCTGAGGTTCCTACTCAAGGGTGAGAGCATCCTATGATCACTAGCCCCTTCCCTGTCCAGTACACTGCCTGGCAGAGTCAGAGCCAGAGACCTAGCTCACTGGTAGAGTGATGGCCTACCATTCACAGGCACAATATTAAATAAAAGAGATTGTCACTGGGGGTGGGGTCTGCTCTGGGCCAGCTGTAGTTCACTCCCACGTGCTTTGCCTTGTGACCTTCGCAGTATTTCCATGAGGTGGGTATTTAAAGAAATAGAAAACCGGGACCCTACAGAGTAAGGAACATTGAAAAACTTACTCAGGGAACATAGCTAGCAGTACAGAGCCCAGACCTCCCCATAACCCTCCTCCACCAGGCCATCTAGCTACAAAACCACCGCAAGGCCAGCCACGTTCGAGGGTCCCAAGACCTGAGTCTAGCCAGAGCTTTTCATTAGCCAACGCTGTGGTTCTGGGCCAGTTGTTTCACTGTGCTGGTTTGCAGGAGCCCTGCCAGCACCCAGGACAGCCAAGAATCTTGCCCAATGATGTCATCAGCACCTGCGCCCAGAGTTAAATTAGAAACAGAAGAACTGAGCCTAGTGGGTTGAAAGACATGGTCTGTGGAATCCCACCCACCACTTTTCTCCTGGAGTGCATTTCTTGAGAGACTACAAACACTGCTCTAGCGGTGTGTCTAGCCTGGTTGACTAGAAATCTAAACTCTACAGGTATAACGTATATGGCAAATGTCACCGGTGTGACTGAGGGTAGTCAGAGAAGGGACTCAAGAACGGGAACCTCAGGGCAGTTGGGATCTCTGGCCTACAGCTCTCTCGTCTCACCTGCTGCTCGCTCAGACAATGAGCATGAAGGGCATGCGACTGGCTCGGGAGCTCTCCATCCAGGTGCAGGAAGGAGGCCCAAGCTGGGCAGGGTAGAGTTGGATGATGAGTGGGAAGAGAAGGAGTTAGTCCTCTCTAGTCTTGGCCATCGTATTCACCCAATCTCACTTGTGCTTCCCCAGCAGCCTCAGCCGAAAACCTGACGTTTCTGAGTGGAGATCACCCTTGGTTAGGCTATGTTCATCTGTCTGTCCATCTCTCTTCCCATTAGCTCTGTCTCCTGTCTACTCATCTAACAGTGTCCCTGTTCATGCGCCCCCCCCCCACGCACACACACACACACACACACACACACACACACACACACACACACACACAGGTTTTCTTGTCCCCACCCCCGGCTCTATCTGTCTGCCCATTCTCCTTTTCCCCTCTGGACTGGCCTCCCATACATTCCCACGTGTGGACATCCATCCTCCGATCATGTAGCCGCCCATCTTTCCATCTGCTTACAGGCCAACTTCCACCAGTTCCCCTGTTTATTTTTCCCCGTGGACCTTGCCTCCTCTGTCTGCCTGCCTGCCATCGGCTTCTCCTCCAGTGTCCATCTGTCCTCATGCTTCTATCTTTCTCTCCATGTTCCTCCATTCGCCATACCTCGTCCCCCTGTGCACTCGTTCCCAGAGACTCCATCTTTCCATTCTACCTCCTTCCGTCCATCCATTCAGACTCAACAATTTAAGGCTCATGGGACAGCGTACCTGACCCCGGGAGCTTCAGACATGTTATAGGATCAGCCATGTGGAAATACAACAGTCCTCAGAGCACAACCCAAAGGAACTTCCTGTGACGTCTGTCTGTGTTCTCTGGGGACAGGACAGGGAGCTTAGCCTCTCCTCCCTGAACCTGCTGTCCACAGAGCTCCTCACCCTGCAGCCTGTCACAGGTGTGCACCATGGAGAACCTGACATCACTGTTGCTGTTGTTGTTACCCTGGCCTCAGAAGCTATCGCTCCAGTTCCCCAGCCTATGGGGCCAGGCCTACAACTTGGGGCAGTACCTCAGGGCTTCACAGAGCCTTGGACAACCCATTCCCATAGCACTCTAGTCCTCTGTCTGCACTGTGCCCCAGAGAGGGGGCTGTCCCTAAGACAGTCCCAGCCTGCGTCCCAGAGCCTGTGGGGCTCATGTCCCTTGCTGCTCACCTCACTGCTCCTGCAAGGAACCATGCCCTGCTTTCTCTGCTTAGACCCTAAGGATTGGCCTGATTGTAGTATACTCGGTCAGAAGAACTTCTCAGCCCGCAGCTACTGTATTAGTCATGAGAATCCCATGTCACTCCAGCATTTAAGATTGCAAATCATCTTATCTGAGTGTGCCACCAGCCCCGGGGCCCAAACATAAGACAGAAGCAGAAGAAAAAAAATGCACCTGAGTGGTCTTTCAACTTCTCTGTGTTTTAACCAGCATCTCTGGTTCTCACTGTACCCTGCCCCCTCCCCCCCAGCTGCATGCCCTCCCTGCCCCAGCTCCTGTGTTTGACCTTCTGTAGCAGTTACAGTTGCATAGTCTGGCTGCATGCTGGAGCACAGGAGGCCTTGGCCCCTGCCCAGCCCTCGGCACTTGTGTAAGGAGCTGTGGCCTGGCAGCTGTGTATTGCCCTCCCCCTACCACCAGGCCATGAGTCTGTTCTCATTTCTTTCCAG
Seq C2 exon
GGAATCTGACTAAGCACATGAAGTCGAAAGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634:ENSMUST00000106307:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types