RnoINT0070926 @ rn6
Intron Retention
Gene
ENSRNOG00000009341 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:RGD Symbol;Acc:1311252]
Coordinates
chr5:139062457-139067823:+
Coord C1 exon
chr5:139062457-139062632
Coord A exon
chr5:139062633-139067736
Coord C2 exon
chr5:139067737-139067823
Length
5104 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGTTCTCGTTTCTTTCCAGGGA
3' ss Score
11.35
Exon sequences
Seq C1 exon
GTACAAATCAAACGAGGAGTATATATATGTGCGAGGCCGCGGCCGAGGGAAGTATGTCTGTGAGGAGTGTGGAATTCGCTGCAAGAAACCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGACCCTATGTGTGCAGGCACTGTCACTTTGCTTTTAAAACCAAAG
Seq A exon
GTAAGAGGCAGTCAGCTGGGCACCACCCCACCCACGGCAGGGATCCCCCCCGGGGGAGCCCCAGCACAGAGTCCTCCCTGTGCCCGAGGGCCGAGTACCCCCACATCCTGGACTCCCACGCCACTTGGTCCCGATGGCAGAGCACAACTGGTCAGTGATGCTCACAGCTGCCACGGTCACACAAGCTCCCACCCACATTCCACAGCCTCTACGCCCACACTTGTGGTTCTCTGTAGACATCATCACCCTTTCCTCTGCATGCCTTCCATGGATCTGATGACCTCTGCCATGCACACTCGTCACACTCACTCTTGCACTAGAGGATCCATTCCACTTGGAGCCACACGACCCTCTCGCATGTTCACTTTTCTCTATTCCTCCTCACCACACCCAGCATTCTCCGATCCACCCCTCTTCTCTGCAGCATTCAGCATAGGGTCCTGCTACCCCCACCCCCACCCTGATCCTGAGAGCCTGTCACTTCAGCTTCCAGCCATCCTCCACATCAGAGTCAGGGCAGGGTCTGGCAGTCATTTATGAGAGGTAGGACTGGCTGTTGAGAGCGTGCATCTCAGAGAGCAGTGACGGGCAATGGTGGCCTGGGCCCACTATAGTCTCGAGGCCCTGGGTGGAGCAGACAGGGTTCTTGAATGGGGCTCTTCCCTTGCTGGGAGGTCCTGTGGCTTGCTTGCAGAGAAAAATGGTGGGCCTTGCAAGGTTGAACACCCTAGGTGGTTGCCTCTCACACTTTGTAGATGCCTGTGTTTGGAGATGAGGATTCTGTCTTCTCTTCAGAGTTAAGTAGAGGAGGAGCCACAGGGGGCTCCAGAGACAGATCCCAAGGCAGACTTTGGCTTTCCTCTTGCCCTTTCTTCTGACTCACAAGGGACAGGGCTACAGCTGAGGACAGGAGTTAGCTGAGCCCTCTAGGCTCCTGTAGCTTTCTGCTCTTGCCACCCTGGGTCAGGAGCTGCCTGTCATATTCCCAGGCCCAGTGGCCTCTTTCCCAGCATGCTCCACTGCTCCTTTCTTACCTATTAGCAGACCCTGCTCGCCTCTGTCTTCTCTCCATCATCTTCGAGCTCAGCACACAGTTTCCCACCATGATCTGGAACTGGATGGAGACGCCCACCCTTCCACTTCCTTTTCCTGGCCCTCTTCCTTAGCATCTCGGAAACAGTGTCTCAATGGGTGCTGATAAGGCACCTGTCCCAAAGCAGCCCAGTTTAGCATGTGTGGGTCCTCTGCCCCACACCCCCATCTCCAGTCTCTCATCTTCTGGGCTTTTGTGGAAGAGAGATTGGAACCACTGGCTGACAACTTAAACAAGGAAGCAAGTGGAGCACTTCTTGATTGGGCCAGAGGAGATCACAAATACCCAACCTCTGTCCCAAGGATGCAGCGGCCTCATCTTCCACCCTCCGCTGGCTAAGGCAACCTCTGGATGGCCGCAGTGCTCTTCTAGGTTTGCTGAGGGATTGCATTGTCCTGCCCTCAGCAAGAAGAGCCCTGAGGAAGCCTCCCTTCTGGGCTACCCACGGTGCACACGCACCTGGCCCCAGTTCCCTGAGGAACTCCCACTTAGCACCTTGGCCTCACTCATTCTGGAAGGTCTGTTTGAGGTGACAGTTTATCCTCTGGGAACTTTTCCCTGGGTCTCTCTGTCTCTGAACCACTCCAGAGATCCAGAGGGTCCTGAGAGTATATCCTAGGGTACAGGAAGTACCTTCAGGAGACTGGGTTTTGTTCTTGGCCAATGACTGGGAGCAAGCTGAGTTCCTCCCTGGGCCTCTGAGCCAGGCACAGGAAAAGTAAGCCTGAAACTTGGAATCTCACACTTCATGCTCAGCACAGAGTGGACAGAGGTGATAATAGGTGAGAAAAGGAAGAGATTCCCCATTAGATATGAAGGGAAAGGGCAGGAGGCCAGAGCACCCAGCCCTCCTTGGAGCCACATCTCTGAAGTCCTGTTGTCCATCAGCTATGATAATATGAGGACTTTCTCTCCTCTCAGGATCTGTTTGCCTCCTTGCCAGGCCCTGCCCTTGAGTTGTGGCTCCAGCCAGGATATATGAGTACTGAGACTGGACCTGGCAGACCTCAATTCCTTGTCTGCACCACCTGGCAATGCCTGTGCCAGGGGACTCTTCTTGTCTGTCTGTCTGCCTGTTTGTGTCTTGTCTTTGTGTCTGTCACACACTGAGGTGGCAGTTTGGCCTCTGGGAACTCTTTGAGGAGGGTCTCAGTGCATGGGGCAGGAGGAGGTAGGAGGCTAGCCCTAGGAAGGTCCCTTTCCTCTTTTCAGATTCTTTCTAGAGGTGGCTGAGCCATAGACAAGCCCTTACACTGATCACCTAGGGAACAGAAATGGTAGCTGTGGACAGGCCCTTGTTCAGCCCAGGTGACAGGGTCTGATACTTGCAAGAACCAGCTTCCCTCCCAGACAACTCGGTCTTCCAGCCACCCACCTGTCCTCTACTTCCAGATGCCAGGCCGGGTTGTCCATGGAGGACAGGTTAACTGAGAAGACCTTGACTGGCCAAGCCTCCTCCCTAAAGTTTCTACAGGATGTTGATGGGGCAGGACAGGCCTCTGAGGGTTGGGTTTCCCTTTTGCCTGTTCAGAGAGCTGCTGAGGTCCTTCCTCAAGGTTGAGAACATCCTGTGATCACCAGCCCCCTCCCCATCTAATACAATACCTGGCGAGTCAGAGCCAGAGACACAGCTTGCCAGTAGAGTGATTGCCTACCATTCAGAAGGCCCTGGGTTGCATCCCAGGCACAATATTAAATAAAAGATTGTCCTGGGGGGGAGAGGGGTGATACTCTGGGCTGGTCATAGTTCACTCCCACTGCTTTGCCTTACGATCTTCCCAGTGTCCCCACGAGGTGGGTATTTAAAGAAACAGAAACTAGGACCCCACAGAGCAAGGAACGTTGAAAAGCTTGCTCAAGAGAACATAGTTAGCAATACAGAGCCCAGACCCACCCCAGCGCCCCTTCCACCAGGTCATCTCCCTACAAAAGGCCACTGCAAGACCAGCCGCGTCAGAGGGTCCCAAGACCTGAATCTAGCCAGAGCTTGACATTAGCCAACACTGGTTCTGGGCCAATTGCTTCACTGCACTGGTTTACAGGAGCCCTGTCAGCACCCAGGACAGCCAAGAATCTTGCCCAATGATGTCATCAGCACCTGAGCCCAGAGTTAGGTCAGAAACAGAGGGACTGAGCCTGGTGGGTTGAATGACATGGTCTGTGAAGTGTCACCCACCACTTTGCTTCTGGGATGCATTTCTTGGAAGACTATTCTGCTCTGTGTCTAGCATGGCTGAACAGAAATCTAAAGTCTTCAGGTATAATGTATATGGCAGCATTCACGTCCTTTGTGACCGAGGGTGCTCAGAGAAGGGACCCAAGGACTGGAACCTCAGGACAGTTGGGATCTCTGGTCCACAGCTCTCTTGTCTTACCTCCTGCCTGCTCCACTCAGCCAATGAACATGAAGGGCATGGGACTGACTCGAGCTCTCCGTCCAGATGCAGGAGGGAGGCCAAGCTGGGCAGGATAGAGTTGGATGATGAGTGGGAAGTGTTAGCTCCTCTCTAGTCTCAGCCACTATATTGGCCCAACCTCAGGAATCTCACTTCCCCAGCAGCCTCAGCAAACCTGGTGTTTCTGAGCAGCGATGACGCTCGGTTAGGCTATGTTACCTCTCTGTCCATCTCTCTTCCTGTTAGTCCCCTCTCCTGTCCACTCATCTAACAGTGTCCCCGTCCATGTCCCTCTGCACAGGTTTTCTTGTCCCCCACTCCCTCTCCCTGCCCATTCTTCTTTTACCCTCTGGTCTGGCCTCCCGTACACAGCCACATGTGGGCGTCCATTTCTCAGTTCCTGCAGCCGTCCATCCCATCTGTTGACAGGCCAACCACACCCATTCCTCCTCTCTGTGGTTCTTGTCTCCTCCATCTGCCGGCCGTCGGCTTCTCCTCCAGTGTCCCATCCATCCGTCATCATGCCCCTACTCTTTCTCTCCACCTTCCTCCGTTCAGTTATACATTCTTCCTTCCCCTAGTCCCTCTGCGCACTCATTTCCAGAGATTTCATCCAGACTTTCTATTCTACCCCCTTCCATCTGTCCATTCAAACTTGGCAATTTAAGGCTCGTGAGACAGTGCACCTGACTCGGGAGCCTCCAATATGTTATATGATCAGCCACGTGGAAACACAACAGTCCACAGAGCACAGCCCCAAGGAACCTCATGTGGCGTCTGTCTGTGTTCTCTGGGGATGGGACAGCACTGTCCACAAAGCTCATCATCCTGAAGCCTGTCTGTCACATCTGTGTGCCATGGGGAACCTGACACCGTTGCTATTATTGTAAGCCTGGCCCCAGGAGCTATCGCTCCAGCTCCTCGACCTATGGGGCTAGGCCTACAACTCGGGGCAGCACCTCAGAGCTTCACAGAGCCTTGGACAACCTGTCCAAGCTCTATCTGCACTGTGCCCTGGCCCCAGACAGAGGATTTTGCTAAGACAATCCCAGCCTGGATCCCAGAGCCTGTGGGGCTCATGTCCCTTGCCTACATACCTCACTGCTCCTGCAAGAAACCATGTCCTGGCTTCTCTGCCTAGTCCCTAAGGTTTGCCTTAGGCGATCTAGTAGTACACCCAGTCAGAAGGACTTCTCAGTCCCCAGCCACTATGTTAGTCATGAGAACCCCGTGTCGTTTCCAGCATTTAAGATTGCACATCATGTTTTCTGAGTGTGCCACAAGCTCCCGGGCCCAAACATAAGACAGAAAAAAAAAATACACTTGCGTGGTCTTTTAATGTCTCTGTGTTTTAACCAGCATCTCTGGCTCCCGTTGTACCCTGTCCTCTCCCAGCCACATGCCCTCCCCACCCTGCTCCTGTATTTTACCTTCCGTAGCAGTTATGGTGGCATAGACTGGCTGGACATGGGGGCACAGGATGCCTCGGCCTGCCCAGCCCTTGGCACTTTGTCTACAGAGCTGTGCCCTGGCAGCGTCTGCTGCCTTCATGCATCCCAGCCTCTCTGCTCTCTCCCTGACACCAGGCCATGAATCTGTTCTCGTTTCTTTCCAG
Seq C2 exon
GGAATCTGACTAAGCACATGAAGTCGAAAGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009341:ENSRNOT00000066774:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=38.3),PF0009621=zf-C2H2=PU(52.0=21.7)
A:
NA
C2:
PF0009621=zf-C2H2=PD(44.0=36.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]