HsaINT0076336 @ hg19
Intron Retention
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:13561]
Coordinates
chr1:41984073-41990581:-
Coord C1 exon
chr1:41990406-41990581
Coord A exon
chr1:41984160-41990405
Coord C2 exon
chr1:41984073-41984159
Length
6246 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTATTCTCGTTTCTTTCTAGGGA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTACAAATCAAACGAAGAGTATGTATATGTGCGAGGCCGCGGCCGAGGGAAATATGTTTGTGAGGAGTGTGGAATTCGCTGCAAGAAGCCCAGCATGCTGAAGAAACACATCCGCACCCACACTGACGTCCGGCCCTATGTGTGCAAGCACTGTCACTTTGCTTTTAAAACCAAAG
Seq A exon
GTAAGAGAGAGTCAGCTGGGGCACTGCCCCTGCCCGCTGCAGGGAGCTCCCCTCTGGGAGTCCCAGCACAGAGTTCAGGTGCCCAGACCTCTTTGCAGGGGGCCTGGAGCAGCCCCATTTCCTGGGTTCCCACCCAGCTTGGTGCCCAGTGGCAGAGCAGCTGGCTCCAGACTGGCCTGTGGCTCCCCATGGCTGCCCCCAGCCATCCTCCTGGAACACACACACAGCCCCTGCACCTGTGGCCACCCGGCCCTGGCCTGCCCAGCCTGGTGCGGCACTCTTGCTCACCGTTCATGGTTTTGCATCTTCTCTCATCTCCCCTCCCTTCTGCATGTCTCCTGAGCCGTTTATCCACTGATCTGAGACACTCCAGCATCCATGCTCGTCACTGCCACTCTTGCATTTGGAAATCCATTCCACTCCCAGCTGCTTAACACACTCGCATGCTCTCTTCTCCTGCCAGAGCGCGCCGACCTCCACCCACCTCTCCACTCCCACCATGCCCCTGCTCCACCCAGCTTCTCTGCACCTCTCAGCACAGGGCCAGCCCCCCACTCCCAGACTGACAGCCCTGTCACCCCTGCCCCAGCCACACCCCACATCAGGGTCAGGATAGGCTCTGGCAGTCACTGGTGAAAGGAGGGGCCTGCTGTGAAAGGCATGCATCCCAGAGAGCTGTGATGGGTGATGGGCATGGCCTGGCCTGCCACAGCCACCCAGGCCAGGCCCCTGGTGTGGACAAAGGAGCTGAGTCCATGAGATTCTTGGATTGCACTCTCCTACTGCAGGATAGGCAGGGAAGGTCCTGGCAGCTTGCTCACTGCAGACTGAAGCGCCTTGGAGGGAGACCCAGGGCTCTCGGCACCCCAGTGTCTTCAGCCTCTGGAGCTTGATAGATTCCTGGGTCAGGGTTTGGACATCAGGGTCCTGTCTTCTCCTTTGAGCAAGTTGGGGGCTTCTGGGAGCCCCACGGTTTCTCAGGGGGTGAAACTCAAGGGCATCCTTCAGCTGTGCCACCTGTTGACCTTTCTTCTGTTGGCAAAGTTGCTCCCAGCAAGCGAGGCTGGGCAGCTGCTCTGGAGGGGGCCCAGCAGGGTCCCTACCCTTCTTCACTTCCTCCGTGCTCTTGCTGCTTGGCCCCTTCCGTTCTCTCTATACCAGGTCAGGGGCCAGTTTATCACATCCCCTGGGAGAGTGGCCTCTTCTCTGACTGTGTTCCCATTTCTGGTCTCCTCACCCCATTAACTGAACCCCTGCCCTCCTCTGTCCCCTCGCCATCATCTGCAAGTTGAGCTCAAATTTTCCTGTCAAGGTTTTGGTTTAAACAGAGGTGCCTGCCCTCCCACTGCCTTTCCCCCATCCTCTTCTCTCTTGGTGTCTCATAAACAATGTCCCAAAGGTTGCCCAGAGAGGGCACATTGGCCCAGGACTCCCCACCCACCCCATGGGTGCTTCGAAGGTGTCTTCCATCCCTGCAGCCCTGCCCAGCATGCGTCGCCCTGGACATGGGCTGTCCCTGACACGCCCTCCAACCGCACTTCCTCTGGCCTTCTGCAGCCAGTCGAGATTTTATGGAAGAGCAAGACGGGGATAACTGACTGACAATTCAATGGACGGTCGTCAACTCTAAAAGTGGAAAACTTATCACCCAAGTCCCCTTGAAGGTGAAGAAAGTGATCCCAGAAAACAGAATAACTGTTAATGCTGGAGCTGTAACTAGAACACGGGCCCCGAGCTCCAGGGCATCACCCCATCATCTTCCTTTCTGTGAGCAGTTAGTTCCCTCCCTTCCCTGGAGTGGGTGGCAAAAAGCTGCACTTGGAGTGGCCTGTGTCCAGGGGACCACACTGCCAGCCCAGGGCCATGCAGAGCACACCTGTGCCCCACACGCAGCCTGGGCTGCCCATCGCCTCAGGAAACCATCACTCTGCCGCGTGAGACTGGAAGTTTCCAGCCCAAGCAGTTTCCCACAGGGGGCCCACTCAATTCCCTTTGCCTTGGGTCCCTAGCAGGAGCCCGTACTTTCTAGGAGATGCCTTCATTGGAAGCCACACTGAGCCTGTCTGCAGTCCCTTCCTGGGTCTCTCTGAGCCAGCACAGAGCCAGGGCCCTGGAGGGCTTTGGAGGGTCCAGAGGGCGTAATCTGAACAGAGGGGCTGTAGGCCCTCCCCATTTCCAGGGGTGTAGAGCATCCCCCGAGGTAAGGCTGCCCCTGCTGTCCTGAAGGCCAGGGCTGTGAGGCCGTGCTCTCAACCAGTGATCAAGCAGTGCCCTGAGCTCTTCCTCAACTGTTCACAGGGGCTTCTAGAAGACTAGAACCTTCCAGAACCAACGAAGGGAGCAGATGGGAAATGGTGGAATCTGAAACTGTTTGACTAATAGAGGGAAGGCCAGGTTGGGATGGTGGCAATGGAAGCAGGGAAGTCTCCCTGTTAACTCTCTCTGCAGTATGGGGGTGAAGGGAGAGCAGGGCGCTGGAGCTCCTGTCTGTTTCTGGGGCCAGGTGTCTTTGTGGAGTGCTGGGCCCCGTCAGCCATCAGCTCAGACAACACAGGCCCCTTGTCTCCGGGGCTGTGTGCCTCCCCATTGGGCCACCTCCAGGCCTGCCCCAGGCAGCCCTCCCGACCCTACCACCCGGCTACACCAGGGCCTGGGGAGCCCCTCCTGCCTTCCTGTCTGTCTCTGTCTGCCGTGTGTGTCTCGTCTCTTGTGTCAGACGTCGTGGCAGCAGCTCAGGCCTCTGGAAACTGGCTAAGGAATGCGTCAGTAGGTGGGGCTGGGGAGGCCTGTGGGTGGCCCTGTGGTGGCTGGGGGTCCCATTTCCTCTTCTCAGATGGTTCCCAGAGGCCAGCGGATGGCTGTGCCATGTCCAGGCCCTTGCACCGATCGCCTCAGGGGACAGAGATGGCCTCAGGTCTGCCAGCGGCAGGGGCAGGGACAGAGCGGTTGATCAAAGCCAAATGAGGCAGGCAGGGTTGTTGGTGGATGCCCTTTTATCGGAGGTTCCGCCTCTTCCCGACACCCATCACTTTACCTCTCACTTGCCTTTCCTCTTCATTCCAGGCCTGTCAGGCTTTGGTGGGGTCTGGGATGACTGTGAGAAGCTGTGGCTCTGCCTGACAAGCTGAGGCCCTGGCCCTCAACAGGGAAGTGGTGTTCAGGCTGTGCCTGCAGCCGTGTGCCCCACCTTCCCCTTTCACAGAGGAGGAGACAGGCCTGGAGAGGGGAAGTCACAGAGGGACCCGGACAGCACTCAGGGCTGCCCATCCAGTGTCCACTCCTGGACCCGCAAAGTCACCTCCGATCCTGACTCCTCCCTGCACCCCCGTGGCGGGGGCAGAGGAGAGGGAGGCCTATGGGGGGCTCCCTGGTGCCTTCTCCTGAGAAAGGTAAAACCATTTCACCAAAAGCATCATCTTAGCATCTCTTCCTCCACACCCAGCATGGTGCGTGGCAGAGCCCCTGGGCTGCTCAATAGAGTGACTCACATGGGGACAGGGGTCTGTTCTCTGCCAGGCACACTCTGCTGCCACTCTACTTGTGTCACCTCATCAAGTCCTCCCGCATCCCCACGAGGTAGGTATTACTTCACGGTTGCAGAAACCAGGGCTCAGAAGGTTGAGGAACTTGCCCAAGAGCCCACAGCTGGCAAGTGGCAGAGCCCACAGTCAAACCCAAGGCTGCCAGGTTCCATCTAGGTTCCATTCTGCCTCCACATGGAGTGGGAAAGGCCCCCCGAGTCTTGAGACCTGGGTCTAGATGGAACTCGGCACCAACCAGCACTGTGACTGTGGACCACTTGATTCACTGTGTTGGTTCAAGCAGCCCTGCCAGCATCCAAGACAGCCAGTGATCTTGTCTAATGGTGCCATCAGCACCTGGGCCCAGAGTCAGATCAGAAGCAGGGAGAACCTCAGCCTGGCGGGGGTTGAATTACATGGACTTTGAAGCTCCTTCCAACATTTTCCTCCTGCGATGACAAGGGCATTTCCCATACATGGCTATTGTACACCCATTGTGTGCCCAGCGTCTAGCTTGGTTCATTAGAGACCTAAACCTTCCAGGCAGAACAGGTGCAACAAGTGAGGTAATAGCCAGAATGAGCAGTGTCCACAGTGCCCTGTGGCCTGGGGTAGTCAGGGTAGGGTGGGCCTGGCTCCACGACCTTAGGACAGTGGGTATCTCTGATCCGCGGAAGACCCCAGCTGCCTTTTCCCACCTCTTGACTGTCCTACTCTGGCTTTGCCTTCTCATGACAATGAGGGCCGAAGTCCACAAGGTTGGATAGGGACCTCTGAGGACCCTCTGGCTACAAGATGACTCTGAAATTTATGGCTTTGCTCCCACTATGGCCAGGAGTAGGACATCCAGATTTATTTCCGGTTGTAGGAGGAAAACCCAAATTGGGAAGGATAGAGTCATGAACTAGGACCAAGGTGAAGAAAGAGGAAAGGAAACAGCTCCCCTCCCATCCCTGCTGCCCTTGACTTGGACACCTCAGGGAATCCCAGCTTAAGGGTCCCCCATTAACCTCTTAGCAAAACCCTAAATATTTCTTCTAATTCTAGGAATGATTAAGAAGCACCCTTCAGTTCATCCATGGGCCCTCTCCCTGGTCACCTATCCATCCATCTCATCTAATTGTTTTCCTGTTCATTTATCTGCTCATCCTATCTGTTCCTACCATTCTCCCATTTGTCCTCCCACCCATCCAACTTCCCATTCTTTCATCCTTCTGTCTGTACTCTCATGCATGTAATAGTGCATGTATCCATTCATCCATCCAACCAGCCATTCTTCCATTCTTCCATTCATCCACGTCTCTGTCCTCCCATCCAGCTCTCCATCATCTCATCTGTTTATTGACCCATTCTCCATCTATCCTTCCATTTGTTTTCATCTACTCACCTATCCTCCGTCTGCCTATTCATCTCCTTATCTGCTCATCTAGCGTTCCATCCTTCTGTCTATCCTCTTCCTGTTCTTCATTCTCTTTATATTTCCTTTATCCACTTTATCTATCCACGCACCAATCGCTCTATTCATCCACTCCAGGAGGCTTAGCTCTTTCCATTCTTCTCTCCTCCATCCATCCATTCAAACTTACCAATTCATTAGACTAATGGGACAGAGCACCTGACTCAGGGAACTTATGACTTATGATGTTAATGACCATATGGAAATATAGCCATCCCCAGGGCAACAGTGAGCACATCACGGTTTGGGAGTAGCTGCTGGGCCCAAAGGAATATCCTGAGGCATCTGGCCTGTGTTCTTCTGGGGCAGGCTGGGATGCTCTGCCTGTCCTTCCTAGAACGCTCCTGTCCACAGAGCTGTGTGGCCTGTGAAATGTTGTGCACCTGTTGGGGAACTGAAGCTGTTGCTACTGTTCCCTGATTCCACAGAGCTGCTGCCTCCACTCTTCAGCTTGTGGGCTGGACCTACAACTTGGGGCAAAGTCAGCCTCCCCTCTGAGGGCTTTGTAGGCATGGAGCAGGACAGAGGCCTTGCCCAGGCCTTCCCTGAACCACCCTGGTCCTGTGTCTGCACTGTAGATTGGCCTGGGGAAACTGAAGGCCCAGAAATGGGACTTCTCTATGGAAACCAAGCTTGGGCCCCCAGCCTTGTGGCTCCTGAGTCCCTGGCTAGTAGACTTCCCTACTCTCACCTTCTGCCCTCTCGCCATGCCTAATATTAAATTTGCCCTGGTTTCTCTACCTACACTTTAGAATTCTGCCCTGTGAGCTGCCCTAGAGGTGTCCTCAGCCAGAAGGGCATGCTCAGTCCTCACCCGTCATGCCGGTCAATGGGAGCCTCCCACGTCATCCCACACTTGAGATGGCCAATAGTCCTGCCTGATGAGTGTCACCAGCTACTAGGGCCAGACTTAAATCAGAAGCAAAAAAAAAAAAAAAAACCTATTGCACTTGAGTTGTCTTTTAATTTCTTTTTTGTTTGTTTTTTAACCAGCATCTCACTTCCTCATTATACTGTCTGTCCCCTCACAGCCCTCGCCCACCCCACCTAGCTGCTGTGCACTGCCCTGAACAGCAGCTGTGGCTACACTTCTGGGCCTGAGCACCGGGGCAGAGGGATACCCCAGCTCCTGCCCAGCCCTGCAGCTGGCAGGGCCTTGACTGGCCTGAGAAACCATGGCCTGCCGGCCAGGTGCTACCTCCATGAGCCCTGGGTCCGCCCTGGCCTCCTGCCCCATAGCAGAGCCTAAGTATTCTCGTTTCTTTCTAG
Seq C2 exon
GGAATCTGACTAAGCACATGAAGTCGAAGGCCCACAGCAAAAAGTGCCAAGAGACAGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-HIVEP3:NM_024503:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=43.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)