BtaINT0072335 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39704640-39705000:-
Coord C1 exon
chr7:39704846-39705000
Coord A exon
chr7:39704760-39704845
Coord C2 exon
chr7:39704640-39704759
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCCCAACCCCATCCCACAGCTC
3' ss Score
7.65
Exon sequences
Seq C1 exon
AGAAAGGGGACTTCGTGGTGCTGGAGCTGGGGGCCACAGGCGCCTCACTGCGTGTTCTATGGGTGACCCTAACGGGCATCGAGGGGCACAAGGTGGAGCCCCGGAGCCAGGAGTTTGTGATCCCCCAGGAAGTGATGCTGGGTCCTGGTCAGCAG
Seq A exon
GTGAGCACTCAGTGCATAGGCTCCGGGCCTGGCTGGGCAGCTGGGGCTCTAGTGGGCAGAGTTAAGCCCCCAACCCCATCCCACAG
Seq C2 exon
CTCTTTGACTTTGCCGCCCGCTGCCTGTCTGAGTTCCTGGATGTGCTGCCCGTGGACAATCAGGGTCTGCAGCTTGGGTTCAGCTTCTCCTTCCCTTGTCACCAGACAGGCCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.5=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCGTGTTCTATGGGTGAC
R:
CTGCAGACCCTGATTGTCCAC
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]