MmuINT0078011 @ mm10
Intron Retention
Gene
ENSMUSG00000025877 | Hk3
Description
hexokinase 3 [Source:MGI Symbol;Acc:MGI:2670962]
Coordinates
chr13:55014427-55014780:-
Coord C1 exon
chr13:55014626-55014780
Coord A exon
chr13:55014547-55014625
Coord C2 exon
chr13:55014427-55014546
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACGCTTCTTGTTCCCATAGCTC
3' ss Score
9.95
Exon sequences
Seq C1 exon
AGCAAGGGGATTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCATCACTACGTGTGTTGTGGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGAGCCCAGGAGCCGGGAGTTTGTGATTCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAG
Seq A exon
GTGAGCAGTCAGGGTGCCTCGTCTGGGGCTGGAGACTTGGCTGGGCGGTCAGAGCTAAGCACGCTTCTTGTTCCCATAG
Seq C2 exon
CTCTTTGACTTTGCTGCCCGATGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTCAATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025877:ENSMUST00000052949:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(25.0=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTAACACTGACAGGCAC
R:
GAACCCAAGCTTCAGACCCTG
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types