RnoINT0070989 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10144298-10144666:+
Coord C1 exon
chr17:10144298-10144452
Coord A exon
chr17:10144453-10144546
Coord C2 exon
chr17:10144547-10144666
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGCTCATCTCCTTCCCACAGCTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
AGCAAGGAGACTTCCTGGTGCTGGAGCTGGGGGCCACAGGAGCCTCACTACGTGTGTTGTGGGTAACACTGACGGGCACCAAGGAACACAGCGTGGAGACCAGGAGCCAGGAGTTTGTGATCCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAG
Seq A exon
GTGAGCAGTCCATGTGTATCCTCTGGGACTTGAGACTTGGTTGGCTGGCTGGGGCTCAGGTGGTCAGAGCTGAGCGCTCATCTCCTTCCCACAG
Seq C2 exon
CTCTTTGACTTTGCTGCCCGCTGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTTAATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.6=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTCACTACGTGTGTTG
R:
CCCTGATTCTCCACGGGGTAT
Band lengths:
182-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]