GgaINT1014863 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9648985-9649330:+
Coord C1 exon
chr13:9648985-9649133
Coord A exon
chr13:9649134-9649210
Coord C2 exon
chr13:9649211-9649330
Length
77 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGG
5' ss Score
8.53
3' ss Seq
CCCGTGCCGTGCCTTCACAGCTC
3' ss Score
9.9
Exon sequences
Seq C1 exon
AGAACGGCGACGTGCTGGTGGCGGAGCTGTGCCAGAACCACGTCCGCACCCTCTGGGTTACCCTCGCGGGCGACGGAAACCAGAACCCACAGCTGATGTACCGCGTCTTTGAGACGCCGGGGGACGTCCTGCAGGGCTCCGGGGAAGCG
Seq A exon
GTACGGGTGGCGGGCACTGCGCTGGGGGGGGTCCCGGGGAAGGGGAGCAGCTGCCCACCCGTGCCGTGCCTTCACAG
Seq C2 exon
CTCTTTGACTTCATCGCACAATGCGTGAAGAGTTTCCTGGAGGAAATCGGCAACCCTCAGCACCGCCTGCCCCTGGGCTTCGTCTTCCCGTTCAGCTGCAGGCAGACGGGGCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.9=100)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGAAACCAGAACCCACAG
R:
CAGCTGAACGGGAAGACGAAG
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]