HsaINT0076400 @ hg19
Intron Retention
Gene
ENSG00000160883 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:4925]
Coordinates
chr5:176317823-176318192:-
Coord C1 exon
chr5:176318038-176318192
Coord A exon
chr5:176317943-176318037
Coord C2 exon
chr5:176317823-176317942
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCCCCCACTTCTCCTGCAGCTC
3' ss Score
11.17
Exon sequences
Seq C1 exon
AGCAAGGAGACTTCGTGGTGCTGGAGCTGGGGGCCACAGGGGCCTCACTGCGTGTTTTGTGGGTGACTCTAACTGGCATTGAGGGGCATAGGGTGGAGCCCAGAAGCCAGGAGTTTGTGATCCCCCAAGAGGTGATGCTGGGTGCTGGCCAGCAG
Seq A exon
GTAAGCACTCACTGCCCAGCCTCTGGGGTCTGGGGGCCTGGCTGGGTGGCTAGGGCTCAGATGGGCAAGGCTGAGCCCCCCCACTTCTCCTGCAG
Seq C2 exon
CTCTTTGACTTTGCTGCCCACTGCCTGTCTGAGTTCCTGGATGCGCAGCCTGTGAACAAACAGGGTCTGCAGCTTGGCTTCAGCTTCTCTTTCCCTTGTCACCAGACGGGCTTGGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160883-HK3:NM_002115:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(21.5=24.6)
A:
NA
C2:
PF0034916=Hexokinase_1=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGTGACTCTAACTGGCA
R:
AGCTGCAGACCCTGTTTGTTC
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)