BtaINT0076037 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16375687-16376478:+
Coord C1 exon
chr7:16375687-16375700
Coord A exon
chr7:16375701-16376248
Coord C2 exon
chr7:16376249-16376478
Length
548 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTAAGTTTTCACATCTCCAGCGT
3' ss Score
5.11
Exon sequences
Seq C1 exon
GTGAAGTAAAAATG
Seq A exon
GTAAGAAATTCATTTTCTTAATCATAGATACTGTTTCTTCATTCACGTACAAAAATGTTTGTGGTGTTGCCCCAAAGCATTTGATTTTTTTTTTGAAGTATAGTTGACTTACAGTATATTAGTTTCAGGTGTACAACAGTCATTTCATATTTATATTCCATATAAAGTTATTATAAAATATTGGCTACATTCCCTATCCTGTACATTTTGTCCTTTTAATTTATTTTATACTTGGTAATTTGTACCTCTCAGTAGCCTTCACCGGTCTTGCCTCCCCAGAGCATTTGGTTTTATGGTCATTTTTCAGTAGACTCTCTAAGTACGTACTGTAACAGCTGTAGTAATACAGAAATGTGTAACGTGCCCCCTTCTTCCCGTGGCCGAGAGAAAGCACGGCTGCTATGTCCGGTTGTCCTTCTCAGATCTTCAGATGTGTTCATATAGTCTTACTTTCATGTGTGTAATTGTGAGCTGTACAGCTGAACAGATTAAGCATCAAGCTGCTTGGTCTCCTTACATCGTTTTTAACTAAGTTTTCACATCTCCAG
Seq C2 exon
CGTCCAGTGAGAATTTTTGTGAATGATGATCGCCATGTGATGGCAAAGCACTCTTCCGTTTACCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACAGAGCGGGCTCTCAAAGCTGTGTCTGACTGGATCGATGAGCAAGAGAAAGGCAGCAGCGACCATGCCGAGTCTGAGAATGTGGATGTGCCTGCGGAAGACGAGGGCAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076:ENSBTAT00000018818:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]