GgaINT0124572 @ galGal3
Intron Retention
Gene
ENSGALG00000001187 | STRBP_CHICK
Description
NA
Coordinates
chr17:9639745-9642852:-
Coord C1 exon
chr17:9642812-9642852
Coord A exon
chr17:9639963-9642811
Coord C2 exon
chr17:9639745-9639962
Length
2849 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CCTTTCCCAATCTGTAACAGAGA
3' ss Score
6.78
Exon sequences
Seq C1 exon
AAGGAGAAAGAAAGAGAGAGTTGAAACAGTAACAAATCATG
Seq A exon
GTAGGTATCTCTATCTTTCATAGGGTTGCATTAATAATATTCTTTGATGATCTTGCATGGGGCCCGATGAAACAAGTGAAGAGATATTCTGACCTTGCACTAAATTGGTGATGGTACTGCATACTTTGAGCAAAGCAGATAAGGTTTGATATTTTGTTAGCCTTTTTAAACCAGAGAGTTGTCTTCTGAGCCTGCATTACATAAATTATTAAATGTGAATGAAGGGGATGTTCCTAAGTCTCTAATAAAACCAGCATTAACAAGCTGTAGCAAATAGTGTGAGTGACCTTGAACTTGTGGATTGCATAACCGAATGCTGCTATTCCCCTTTCACTCCTTGCTCACAAAAGCAAGTGTGAAATTACTCATTTTTGTACATGTGTATGGAAAGCTGAATGCATGTGTTCCTATGCACTTTTAATTAAAACATAGATGAGATATAAGTAAAGGATATGTACCAAGTGTATTTAACTAAATGAGGAGTCATTTCTGGTCTACCTGGTGCTGCTCCCAAATTGGGAACATCAGAGATGATTAAATTATCAAGCTGTATAAATGTGAAGGACTGTGATGGTAAGATTCTGAAGATGTGTTCACAAAAGGGCAGTAAACCAACTCAGTTCTGAAAAATACTGTGGAGAGCAGTTTAAGCATACTGATAGATTTTAAGTTCTCTTACGCATTATTGCTGAGAGAAAGGAAATGAGAATAAATGCAATAAATTTTAAATACTCTTCTCTAACACCTGTATAGCTGATGACTGATGATAGCCAGGATGTGTGTTTATATGTAAATAAATATTTACACATATTTATGTGTGTGTGCATGTGTATGTGTGTGTATATATATGAGATATATATATAAAATGAGATCCGGGACAAGATTTTTACCTGTTTTAGAGCACAAAGGGAGGAAGAAAATTTGACACAGCAGAGCTGTCAATATAAAGTCTTCTTTTGCTATTACTTTTGGTCTAAACTGTAATGAATAATTGATCTTGCCAATGCCTAACTGTTAGAAAAGAACAGAAATGTCTTCAAATCTGAGTTAATAGTCAAGCAGCAGCAAACTGTTTTTCCTGATTGATATTTCATGAGATTTGAGGTGGTAGGGATGAATGAATAAATCCAGCTTGTCAATTTTCGCTGCAGAACTGCAGCTTCTTTGTGTACCCAAGCTGCAGATAAACCTCAAGAGGAACCTTCTGGAAATGTTTTTGCAATCTGTGAAAGTACTGGAGCAACTCCAGACCCCTGGCTGATGAGTTTTAACTACCTGAATTGTTGTTGTGGGTAGGCATGGAGAAGTTAAGGAAGTAACTGTAGCACTGACCTTTGAATGTAATAACCAAGGAGGCCACAACCTGTTCATTAACAAGTATTAAACCCAGAAGCTTTCCACATCCTTCACAGGCCTGTTTTGCGGTTGGACTTGATGATCTTTAAGGTCTTTTCCAACCTGAGCAATTCTGTGATCTTCTATGACCTGAAGGATGTGTGCTATTACAGAGTATGCTGCCGTTAACAAACCCACGGACTAGGGGGTAAAAACTAAAGCCATTTGCAGTGTTTAATGTGTAGGAGGACAGAGTTCTGGTTGATGATTCTAAGTTCCAGGGGACTTTCAGTAGTGACTGGCATGTGTCTAGAGAATGTTTAGAGGTGTACTTGCTGGAGGTCTGTGCTGTGAGAGCAGCTGGTCCAGGTCACTGTTTAGATCAGGTAAGTCTCACTTGGATAGAGTGTGGCAAACCATAACCTCTTGGCACAAGTTGCTTAACCGGTTACGTTTACCTCCTTCAACAGTATTGCTCAGATCTTGAAGTTTCACTGCAAACTCATCAGATTTTTAAGAAACTATTTCTGCACTCCTTACCAGCTTATCCCTATCCTCATTTTCGTTCATGCCTTTGTAAATCCCAGTGCAGTTTGCTAAGCTGCACTTAGTAATATGTAGTGTCTGTGACTTCGTCTGCAGCAGCAACAAAACCACGGGGGAGGGGCTATTTAATTGCTTTGTTCTAAAGGGGTTGCCATTGACTTCTAACAGAAATTGAGACAGCTGCACTCCGTGCATCTAGAATGTACGAAGTTGTGTTTAAGAGAGTCATCTCCATATTATCCTTGTCAGCCCTCTGCTTTCATCCTGGGCTATTTAGGTTCTGAATTAGCCTACTTTAAAATGTGGCTACCTTTTGGAATCAAGGCCCGGGCTTTTCTCTTTGCTTTGAGCTATCCAGCTACTGAAGCTTGAGACACGTCAGCAAAGGTCACTGAAATTCAGGATCTAAGTTCCTGCAAGTATTCCTGAGTAGGGTGTTTCCTTCAATACTGTTACTCGCAATTTTTATCTCCTTGATATGTGGGGTGTAGGTGTTCTCTCACTGACGTTGAAAACCTAATCTAAATTAACAAGCGAGTCAAAGGATGAGGGAAGTTAAAGATGTTTGAAAGCAAAATGAGTTGCCCAGGACCGAAGGGATGTACCTCCAGAGCACAATTAATCTCATCCTACTGTGTGCATAAACATAATTGTGCTCCAGATGTGCCAGTTCCTCTTAGCAGCCAGTATTACTAGCCAGTAAAGGCTTTTAGGCATCTAATGCTAGGTGCCAAAAAGAAACCCCACTTTAAGCCTTGTACCTTTTGCCAGCTTACTGCTGATTCCATGGTAGTCTTTGGTGTCTGCGTATCTCTCTGATAAGAAATCAGTCCTGCCAGATTGTAATGCATGGTCATCATAAAACATTTTCTTACATCTATCAGGGAGGACTGCCATTCAGGTAGTGTCTTTCTATTGATAATTGAATAATTTTGTTCCTTTTCCTCTCCTTTCCCAATCTGTAACAG
Seq C2 exon
AGATCTATCCGATCTTTTGCTAACGATGACCGCCATGTTATGGTGAAACATTCAACCATTTATCCATCTCCAGAAGAACTTGAAGCTGTCCAGAACATGGTATCAACAGTAGAATGTGCCCTTAAACATGTGTCTGACTGGATGGATGAAAAGAACAAGTCTGTAAAATGTGAGGGTGATGTGGAAGCAAAAGAGGAAGCTGCAGAAAGCAATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187:ENSGALT00000034915:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142301=DUF4333=WD(100=60.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]