HsaINT0161126 @ hg19
Intron Retention
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:16462]
Coordinates
chr9:125941286-125946577:-
Coord C1 exon
chr9:125946411-125946577
Coord A exon
chr9:125941507-125946410
Coord C2 exon
chr9:125941286-125941506
Length
4904 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTTCGTTCTCCTTCTAACAGAGA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTGTGTTCCAGAGAACAAGCCTTCAGACATTTGCTATATTGACGCTGAGCTGTCAGGGGACTCAGGCTTATGAGGAGGTATTGTTACACAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAAAAGAAGCTAAAATACTATAGAAAACCATG
Seq A exon
GTAGGTTATTGTGGATATTTTCATAATTTAGTTACAAAAGACTCCAGTAATTTAAAATTAGAAATGTTAACAGTGAGGGCAAATGAAAAACAGTGGTGTTAATTTTTGGCTTTAGTGTGTCATATAAAGATGGCACTCTACTATTCAAAGCGAATGAATTCAGATTTACTACAAGCTATGTAAACCACAAGGTAGGGCCTCATGAGCCTGTAGGCCATGAATTATTAAAACAAAGGAGGAAATGCTCATAAATAATATTTTCTAATAAAACTGGCATTAGCAAACTGATACAAATAGCTAGGTTTTTAACTTTAAGTTCAGTTTTTTTTCTTGTGGAAATTAAAAATTCTGAACCAGTCCTTTAATTAGTGATATGAATGATGTAGAAGTTTATAATATGTGTGAATGTTTAACTGAAAAAGCCACCTCTTTTTCATACTTTTAAAATAATAGGGTCAAGTGCTGAGTATAGTAGGGGCACTGAATTGAGAATCAAAGAAACCTTGCTTTTTGGGAAGAGTTCAGACTTAAATTGAATTTGTGATGTTAGATGAGCTCATAGTCTCTGGTGCCTAGGCTTTTAATTGGTAAAATGTGCTGATTTTTTTTCCCTTAGTATTATGAGTTCTGGAGGGTGTTATATGAATTTTTTTTCTCCTAAGTATAAGCGAGAAAAGGTTTCTTTTTTTTTTTTAAAGACGGAGTCTCACCCTGTTGCCCGGGCTGGAATGCAATGGCGCAATCTCGGCTCACTGCAACCTCCGTCTCCCAGGTTCAAGCAATTCTCCCTGCCTTAGCCTCCCGAGTAGCTGGGATTATAGGTGCCCGCCACCATACCCAGCTAATTTTTTTTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGTTGGTCTCAAACTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATCAGCCACCGTGCCTGGCCAAGATTTTAAAAACACATTACCAGTGAGAGAAAAAGCAGAAAATATTAATCACCAGTATGATTATTTGGAATATGTTGTTTAGCCGGTCTGTTGGTGGTGATTTTTTTGATTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGATCTTGCTCTGTCCTCCAGGCTGGAGTGCAGTGACATGATCATAGCTCACTGCAAACTCCAACTCCTTGGGCTCAAAGGATCTTCCTGCCTCAAGCCTCCCAAGTAGCTTGGCCTTATAGGCGCATGCCACCACATCTGGCAAATTTTTAAATTTTTTGTAGAGACAGGGTTTTGCTTTGTTGCCCAGGCTGGTCTGGAACGCCTTGGCTCAAGGAACCCTGCTGCTGCCTTAGCCTTCCAAAGTGCTGGGATTATAGGCGTGAGGCACCGTGCCCAGCCTGGTGATGTTTCTTTAAATGTTACTTGCTTTTAAAAATATTTGTGCCAAGGATTATAACTTAATCAGCTGACTCCTTAGAGAAGAAATTCTGATATTTTAGATCTAGATTGTGGGAACAAATGTTAACTTGGGATTTTCCCTGTCATTTTAGTTATGTGGTGAAATGTGAAAAAACCACACTGATTCTTTTATATCTTACCATGTGAATTATTTACCTCTCATTCCGCTCATTTCTTATAGTCTTGATATTCTTACAACTAAAAGAAATGCTTTATTATTTTTCAGAGTGGATGAAGATGTCTTCCTTAGTTTATTCTTTTTAAATTCAGCTTAGATTTTCTGGTGTATAAATTTTGTGTTTTTATATAATTTAATTGATGAGTATTTTCTGGTTTCTCTTATTACTTGCTTTTTAGATCTCAGATTGCAATGAGAATTTTCTCTTTCTGCATGGTTCTTCTGATTTAATTTTTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCAGCTCACTGCAACCTCTGTGTCCCGGGTTCAAGTAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTGTAGGGGTGTACCACCATACCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCTGATGATCCACCCTCCTCGTGAGCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGTGCCCAGTCTGATTTATTTTTTCAATACTTAAAGAAAATCTGTTTAGAGCTTATTTGAGTAAATAAGATTTCTCTGCATTTCTTCAATTTTTCCTGTTACTGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGAAGTTTTGCTCTTGTTGCTGAGGCTGGAGTGCAATTGTGTGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCAACCACCATGCCTGGCTAAATTTATATTTTTAGTAGAGACGAGGTTTCTTCATGTTGGTCAGACTGGTCTCGAACTGCCGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTGTCACTGTTGTTTCATGGTGCTTATTCTGTCACATCCAGTAGAATGTTAGATGTAACATTTTTAGATTTAACATTGGCAGTCTGTATTATTTGTGTGATAAATGACAAATGTTTATGTAATGTAGCAATACGCAGTTTTGCTCAGGTGTGGCCGGTGTGCAGGACTAGGTAATTTAGCAAGTACATGAGCCTAGCTAACAGCCTAGCATTTCCAACTCTATGGCTCTTTTGTTCTCTAGTACTTACTTTGGGATAGATGAATATGTCTCACTAAGTGTTTAAAAAATTTGTTTCTTTGTGGCAAACTGCACCAGTTGGAAAACTGGTTGTGGATGTTGAGCAAGAAAGACATCTAGACAGATGATTTTTATTGAGAAAAAGAAAAGCTTTGTAATCTATTTTAGCTCTGTTTTTATATAATGATAGAGGTTTTCAAATGATTACCTTTTCAACCAAAGTTTTCTTTGCTTTATAGAGGACAGTGACACTATAGTGTTAATTTACTGTTATCCAAAAATAATGTGATTTTTAAACATAGATAAACAAGAACAAAAGAGGCAAGACTGTTCATAAAAAATTGAGAATGTTTTAGTTTGCGATGGACTTCAAAACAAAATATTTACCATGTACTAACATATAATTTCATGTAAGTAAAGACAGTATAACCAGCTTTTAAATGGAATATTTTAGGCTTTATGGAAAACTCACTAAGTTATCCTTGTTCATTTTGCTGTGTATTGGTATAAGTGTCTTCGTGATATTTGTAAATTTGGAAAAATTTAAAGGTTTTTGGATGTGTGACTCATGAGTGTATAGAATCTACTCTGTTAAATTTTCATGAAATTCATTCATTTTCTGGGTTCTGGTCTGTTCCACTGATCTGATATTTCATTTTAGTTAGTGGTACCACCCTTCGATCTTTGTAGAGTATTTCTTGATACCCTTATTTATGTTTTTCCCCAAATGAGCTTTAAAATGATTTTTGTTGAGATTTAAGTAAATCAATCCTGAGGAGATTTTGATTGAGAATATATTTGTAAATTAGCTTGTCATTTTGCAGTATGTATTTTTCCCACTCTGCATTTGGAATGTCTCCCACTAGTCTATTTAAAAAATTAAAGGCCTTGCACCAAAGGTTTGAATGTCAAATAGTGAACACTATTTTAATGTTTTTTATAGTTTTCTTATAGTGTTCACAGATAACTTTTTATTTCGTATTATTCTATATTATGAAATCCTAAATTCTAAAATTTAAATAGAGACCTGGGTCTTACTCTGTTGCCCAGGTTGGAGTGCAGTGACATAGTGGTAGCTCACTTAACCTCGAACTCCTGGGCTCTAAGGATCCTCCTGCCTCAGCCTCCTGAGTGGCTAGGACTATAGGCACCTGCTACCACGTCCGGCTAATTTTTTTTATGTTTTGGAGAGATTGGATCTTGCTACATTACCCAGGCTGGTCTCCAACTTCTGGCCTTCAAGCGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGAATTATAGGCATGAGCCACCATGCCCAGCCCTGAAATCTCAATTTTCTAAGGTTAGAAGTCTTTGGCAGTTTGGAAAGGTTAGAAGTCTTTGGCAGTTTATGAGTCACTCACCATCCTGCATTTCTGCGACTCTCTTGAAGCTAAGAAGTATCTAATTCTTGCAGATGATGTGTGATGTGGATGACATTTGTTGAAGTAGTATTCAGAATGTGTAGGTTCAGCTAAAAGATAACTTTATTCATTTATTTATTTATTTAGAGACAGAGTTCACTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCTCAGTAGCTGGGACTATAGGTGCATGCCACGACACCCAGCTAATTTTTTTATTTTTAGTAGAGACGGGGTTTTACCATGTCGGCCAGGCTGGCCTCAAACTCCTGACCTCAAGTGATCTGCCCACCTCGGTCTCCCAAAGTGCTGGGATTACAGGCATGTGCCCCCGTGCCTGGCCAGGATAACATTATTTATAAATAATGCCAAGAGTGACTGAAGTGAACCTTACCAAAACATGAATGGAAGAGCTCTTGTTTTCTGGTGAGGAGTTCAGTAGAATGGGATTTTACTTCCCACGCTGGAGCAGTTTTTTCTTGTTTCAGTATTAACTGTTTCACAGTAGACAGTCAGTGCTATGGGTTGGCTAAAGATATAGTTGTATATCATCTTTTTCAGGTGATGTTTCTTTTGTTGAAGTAATTGTTTTCGTTCTCCTTCTAACAG
Seq C2 exon
AGATCTATTCGATCTTTTGCTAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCGGAGGAACTTGAAGCTGTTCAGAATATGGTATCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGTTGGATGAAACAAATAAAGGCACAAAAACAGAGGGTGAGACAGAAGTGAAGAAAGATGAGGCCGGAGAAAACTATTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209-STRBP:NR_033234:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)