BtaINT0142751 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94338430-94340960:-
Coord C1 exon
chr11:94340793-94340960
Coord A exon
chr11:94338651-94340792
Coord C2 exon
chr11:94338430-94338650
Length
2142 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTTCTTTCATCTTCTGACAGAGA
3' ss Score
8.58
Exon sequences
Seq C1 exon
TGTACTCTAGAGAACAAGCCTTCAGATATCTTTGCCATATTGACTCTGAGCCATCAGGGGACTCAGGCTTATGAGGAGGTACTGTCACACAAAGCAGTGTCTAGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAGAAGAAGCTAAAATACTATAGAAAACCATG
Seq A exon
GTAGGTTATCATTTATAATTCCTTAATTTAGTTACCGAAGAGCTCAGTTATTTAAAGTTGAAACTATTAACAGTGAAGGCAAGTAAAAACAGTGGTGTTAATTTTTGGCTCCAGTGCATCAGCTGAAGATGCCATTCTACTATTTAAGCAAAGCGAATGAGTTCAGATTTATTACGAGCCCTTTAAACCACAAGATGGAGCCCCATGAGCCTGCAGTCCATAAATTATTAAATACAAAGGAGAGAATGCTCATAAATAATATTTTCTAATAAAACTGGTATTAGCAAACTGATACAAATGGCTAAGGTGACCTTGAACTTGAAATTATGTAATTTTTCTCTAGCCTTCTACCTGAAGCTCAGTGTTTTAAAGGCCTGAACCAGTTCTTTAAGTAATGATTTGAAGGTTTTGCAGTTTGTAAAATGTGTGTGTATTTAACTGAAAACAAAACAAAACAAAACTTTTTTTTCCACGTGCTTTTGATTTTAAAATAATAAGGTCAAATATTGAGTGTATTGAGGATACTGAACTGAATATCCTAGAAACCTTAGTTTTTGTGGAAAGTTCATACTTAAATTGAATTAATTTTTTAATTGGTAAAATATGCTGAAATATTTTGCTCCTATTTTGGTTCTGAAGGATATGTGATTTCCCCCCCACCCCCCCACCGCTAAGTGTAAGCAAGAAAATGCTTAAAAAAGATAAGTGTGGGGAAAAGCACAAAATATTAATCATCTGTGTTTTTGAAATATGTTGTTTAGCAAGTCTGAAGGTATTTCTTTAAGAAAGATTTTATTTAAAAAAAAATTTGTTCTGGGTTTGTTCTAGCAACTTAGTTGACTTGGTCTCTAAAGAAGGAACTCTACTAATATTTTAATTGTGAATGGTGGGGAAAAATGTTAACTTGGGATGGATTTTCTCTGTCATTTAGTTTTATGGTGAGCTGTGATGAATGACACTATAACTTGTATTTCTTCTCATATGAAATGAATTATTTGCCTCTTCAGCTTATTTATCTGTTGCAGTCTAGATATTCTTACTGCTTAAATACTTCATATATATCACTTGTCATAGTTGGTGAAAATTCTTTTCCTAGTTTATTCATTTTAAATGTAGCTTGTTCATTTTGCTGTGTAGTGGTACAAGTGTCTTAATGGTATTTGTAAATTTGGAGATATTCAAAGGTTTTTGGATGTGTGACTCATGAGTGTGAAGGATCTACTCTATTAAAATTTCATGAAATTCATTCTATTTCTAGGTGCTAATCTGCTCCACTGATTTCTGGGCCAGCATGTCATTTTAATTATTGCTTTTTAAATTTTTGATATTTTATTTTAGCATAATGGTACCACCCATCCACCTTTGTAGAATAGTTCTTAATGCTGTCATTGATCCCTCCCCTCACCCCCATGAGCTTTAAAATTATTTTTGTGAAATACTAAAATGAATCTATCTTGAGGGAATTTTGATTGAGAATGTGTACATATTTGTAAATTAGTTTGGGAAATTAATTCTTTTACAATATTTATTTTCCCCATTTTGGAAGCTGGAATATCTCCTACTAATCTATTTTAAAAATTAAAGCATCACACCAAAGGTTTGAATGCCAAAAAGTAAGTAAGATTCTGATGTGGCCCATAGTTTTACTGTCTTGTTCACATATAACTTTGTATTTTATATTATTATATTACAAAATCTCAATTTTTCAAAGTGCAGAAATATTCAGCAGTTTGGATAGGAGTGACTGGGTATCATGAGTCACCTGTATGCATTTCTATATACTCTGCCGAAAATAGGAAGTGTCTGTTTCTTGCCAATGATGTGTGATATGGATGACCTTTTTTGATGTGATATTGAAAACACATCTATTCAGCTAAAAGGTGGAATATACATAATACTGAATGTGATGTGTGTGAACTTTTCCAAAACATGAATGAAAGATTTAAGGTTTTCTGGTGTGGGTTTTTACTTCCTTTCTTGAGCAGTTTTTTTGTTGTTTCAATGTTAACTGTTTCACAACAGTTTGACATAGCTAATCACAACAGTTATTAGCTGTGACTTGATTAAAATATATTTGTAAGTCATCCTTTTCAGGTACCATTTCTTTTATCAAAGTAATAGTTTTCTTTCATCTTCTGACAG
Seq C2 exon
AGATCTATCAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCGACAATTTATCCATCTCCGGAGGAACTTGAAGCTGTTCAGAATATGGTATCTACTGTTGAGTGTGCTCTTAAACATGTCTCAGATTGGCTGGATGAAACAAGTAAAGGCACAAAAGCAGAGGGTGAGACCGAAGTAAAGAAGGAAGAGGCCGTAGACACCTATTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921:ENSBTAT00000029226:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development