GgaINT0124572 @ galGal4
Intron Retention
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8928537-8931775:-
Coord C1 exon
chr17:8931604-8931775
Coord A exon
chr17:8928755-8931603
Coord C2 exon
chr17:8928537-8928754
Length
2849 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CCTTTCCCAATCTGTAACAGAGA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTGAACTACAGAAAGTGACTCTTACAGCATCTTAGCTCTATGAACTCTTGAGCTGTCAAGGGACTGAGAGGCTTATGAAGAGGTTCTGTCAAGCAAAACAGCTCTTATCAAAGACACCAAGGAGGAGGGAAAAGGAGAAAGAAAGAGAGAGTTGAAACAGTAACAAATCATG
Seq A exon
GTAGGTATCTCTATCTTTCATAGGGTTGCATTAATAATATTCTTTGATGATCTTGCATGGGGCCCGATGAAACAAGTGAAGAGATATTCTGACCTTGCACTAAATTGGTGATGGTACTGCATACTTTGAGCAAAGCAGATAAGGTTTGATATTTTGTTAGCCTTTTTAAACCAGAGAGTTGTCTTCTGAGCCTGCATTACATAAATTATTAAATGTGAATGAAGGGGATGTTCCTAAGTCTCTAATAAAACCAGCATTAACAAGCTGTAGCAAATAGTGTGAGTGACCTTGAACTTGTGGATTGCATAACCGAATGCTGCTATTCCCCTTTCACTCCTTGCTCACAAAAGCAAGTGTGAAATTACTCATTTTTGTACATGTGTATGGAAAGCTGAATGCATGTGTTCCTATGCACTTTTAATTAAAACATAGATGAGATATAAGTAAAGGATATGTACCAAGTGTATTTAACTAAATGAGGAGTCATTTCTGGTCTACCTGGTGCTGCTCCCAAATTGGGAACATCAGAGATGATTAAATTATCAAGCTGTATAAATGTGAAGGACTGTGATGGTAAGATTCTGAAGATGTGTTCACAAAAGGGCAGTAAACCAACTCAGTTCTGAAAAATACTGTGGAGAGCAGTTTAAGCATACTGATAGATTTTAAGTTCTCTTACGCATTATTGCTGAGAGAAAGGAAATGAGAATAAATGCAATAAATTTTAAATACTCTTCTCTAACACCTGTATAGCTGATGACTGATGATAGCCAGGATGTGTGTTTATATGTAAATAAATATTTACACATATTTATGTGTGTGTGCATGTGTATGTGTGTGTATATATATGAGATATATATATAAAATGAGATCCGGGACAAGATTTTTACCTGTTTTAGAGCACAAAGGGAGGAAGAAAATTTGACACAGCAGAGCTGTCAATATAAAGTCTTCTTTTGCTATTACTTTTGGTCTAAACTGTAATGAATAATTGATCTTGCCAATGCCTAACTGTTAGAAAAGAACAGAAATGTCTTCAAATCTGAGTTAATAGTCAAGCAGCAGCAAACTGTTTTTCCTGATTGATATTTCATGAGATTTGAGGTGGTAGGGATGAATGAATAAATCCAGCTTGTCAATTTTCGCTGCAGAACTGCAGCTTCTTTGTGTACCCAAGCTGCAGATAAACCTCAAGAGGAACCTTCTGGAAATGTTTTTGCAATCTGTGAAAGTACTGGAGCAACTCCAGACCCCTGGCTGATGAGTTTTAACTACCTGAATTGTTGTTGTGGGTAGGCATGGAGAAGTTAAGGAAGTAACTGTAGCACTGACCTTTGAATGTAATAACCAAGGAGGCCACAACCTGTTCATTAACAAGTATTAAACCCAGAAGCTTTCCACATCCTTCACAGGCCTGTTTTGCGGTTGGACTTGATGATCTTTAAGGTCTTTTCCAACCTGAGCAATTCTGTGATCTTCTATGACCTGAAGGATGTGTGCTATTACAGAGTATGCTGCCGTTAACAAACCCACGGACTAGGGGGTAAAAACTAAAGCCATTTGCAGTGTTTAATGTGTAGGAGGACAGAGTTCTGGTTGATGATTCTAAGTTCCAGGGGACTTTCAGTAGTGACTGGCATGTGTCTAGAGAATGTTTAGAGGTGTACTTGCTGGAGGTCTGTGCTGTGAGAGCAGCTGGTCCAGGTCACTGTTTAGATCAGGTAAGTCTCACTTGGATAGAGTGTGGCAAACCATAACCTCTTGGCACAAGTTGCTTAACCGGTTACGTTTACCTCCTTCAACAGTATTGCTCAGATCTTGAAGTTTCACTGCAAACTCATCAGATTTTTAAGAAACTATTTCTGCACTCCTTACCAGCTTATCCCTATCCTCATTTTCGTTCATGCCTTTGTAAATCCCAGTGCAGTTTGCTAAGCTGCACTTAGTAATATGTAGTGTCTGTGACTTCGTCTGCAGCAGCAACAAAACCACGGGGGAGGGGCTATTTAATTGCTTTGTTCTAAAGGGGTTGCCATTGACTTCTAACAGAAATTGAGACAGCTGCACTCCGTGCATCTAGAATGTACGAAGTTGTGTTTAAGAGAGTCATCTCCATATTATCCTTGTCAGCCCTCTGCTTTCATCCTGGGCTATTTAGGTTCTGAATTAGCCTACTTTAAAATGTGGCTACCTTTTGGAATCAAGGCCCGGGCTTTTCTCTTTGCTTTGAGCTATCCAGCTACTGAAGCTTGAGACACGTCAGCAAAGGTCACTGAAATTCAGGATCTAAGTTCCTGCAAGTATTCCTGAGTAGGGTGTTTCCTTCAATACTGTTACTCGCAATTTTTATCTCCTTGATATGTGGGGTGTAGGTGTTCTCTCACTGACGTTGAAAACCTAATCTAAATTAACAAGCGAGTCAAAGGATGAGGGAAGTTAAAGATGTTTGAAAGCAAAATGAGTTGCCCAGGACCGAAGGGATGTACCTCCAGAGCACAATTAATCTCATCCTACTGTGTGCATAAACATAATTGTGCTCCAGATGTGCCAGTTCCTCTTAGCAGCCAGTATTACTAGCCAGTAAAGGCTTTTAGGCATCTAATGCTAGGTGCCAAAAAGAAACCCCACTTTAAGCCTTGTACCTTTTGCCAGCTTACTGCTGATTCCATGGTAGTCTTTGGTGTCTGCGTATCTCTCTGATAAGAAATCAGTCCTGCCAGATTGTAATGCATGGTCATCATAAAACATTTTCTTACATCTATCAGGGAGGACTGCCATTCAGGTAGTGTCTTTCTATTGATAATTGAATAATTTTGTTCCTTTTCCTCTCCTTTCCCAATCTGTAACAG
Seq C2 exon
AGATCTATCCGATCTTTTGCTAACGATGACCGCCATGTTATGGTGAAACATTCAACCATTTATCCATCTCCAGAAGAACTTGAAGCTGTCCAGAACATGGTATCAACAGTAGAATGTGCCCTTAAACATGTGTCTGACTGGATGGATGAAAAGAACAAGTCTGTAAAATGTGAGGGTGATGTGGAAGCAAAAGAGGAAGCTGCAGAAAGCAATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187:ENSGALT00000001802:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]