HsaINT1043271 @ hg38
Intron Retention
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]
Coordinates
chr9:123179007-123184298:-
Coord C1 exon
chr9:123184132-123184298
Coord A exon
chr9:123179228-123184131
Coord C2 exon
chr9:123179007-123179227
Length
4904 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTTCGTTCTCCTTCTAACAGAGA
3' ss Score
10.25
Exon sequences
Seq C1 exon
GTGTGTTCCAGAGAACAAGCCTTCAGACATTTGCTATATTGACGCTGAGCTGTCAGGGGACTCAGGCTTATGAGGAGGTATTGTTACACAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGGGGAAAGGATCGGAAAAAGAAGCTAAAATACTATAGAAAACCATG
Seq A exon
GTAGGTTATTGTGGATATTTTCATAATTTAGTTACAAAAGACTCCAGTAATTTAAAATTAGAAATGTTAACAGTGAGGGCAAATGAAAAACAGTGGTGTTAATTTTTGGCTTTAGTGTGTCATATAAAGATGGCACTCTACTATTCAAAGCGAATGAATTCAGATTTACTACAAGCTATGTAAACCACAAGGTAGGGCCTCATGAGCCTGTAGGCCATGAATTATTAAAACAAAGGAGGAAATGCTCATAAATAATATTTTCTAATAAAACTGGCATTAGCAAACTGATACAAATAGCTAGGTTTTTAACTTTAAGTTCAGTTTTTTTTCTTGTGGAAATTAAAAATTCTGAACCAGTCCTTTAATTAGTGATATGAATGATGTAGAAGTTTATAATATGTGTGAATGTTTAACTGAAAAAGCCACCTCTTTTTCATACTTTTAAAATAATAGGGTCAAGTGCTGAGTATAGTAGGGGCACTGAATTGAGAATCAAAGAAACCTTGCTTTTTGGGAAGAGTTCAGACTTAAATTGAATTTGTGATGTTAGATGAGCTCATAGTCTCTGGTGCCTAGGCTTTTAATTGGTAAAATGTGCTGATTTTTTTTCCCTTAGTATTATGAGTTCTGGAGGGTGTTATATGAATTTTTTTTCTCCTAAGTATAAGCGAGAAAAGGTTTCTTTTTTTTTTTTAAAGACGGAGTCTCACCCTGTTGCCCGGGCTGGAATGCAATGGCGCAATCTCGGCTCACTGCAACCTCCGTCTCCCAGGTTCAAGCAATTCTCCCTGCCTTAGCCTCCCGAGTAGCTGGGATTATAGGTGCCCGCCACCATACCCAGCTAATTTTTTTTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGGCCAGGTTGGTCTCAAACTGACCTCAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAAGCATCAGCCACCGTGCCTGGCCAAGATTTTAAAAACACATTACCAGTGAGAGAAAAAGCAGAAAATATTAATCACCAGTATGATTATTTGGAATATGTTGTTTAGCCGGTCTGTTGGTGGTGATTTTTTTGATTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGATCTTGCTCTGTCCTCCAGGCTGGAGTGCAGTGACATGATCATAGCTCACTGCAAACTCCAACTCCTTGGGCTCAAAGGATCTTCCTGCCTCAAGCCTCCCAAGTAGCTTGGCCTTATAGGCGCATGCCACCACATCTGGCAAATTTTTAAATTTTTTGTAGAGACAGGGTTTTGCTTTGTTGCCCAGGCTGGTCTGGAACGCCTTGGCTCAAGGAACCCTGCTGCTGCCTTAGCCTTCCAAAGTGCTGGGATTATAGGCGTGAGGCACCGTGCCCAGCCTGGTGATGTTTCTTTAAATGTTACTTGCTTTTAAAAATATTTGTGCCAAGGATTATAACTTAATCAGCTGACTCCTTAGAGAAGAAATTCTGATATTTTAGATCTAGATTGTGGGAACAAATGTTAACTTGGGATTTTCCCTGTCATTTTAGTTATGTGGTGAAATGTGAAAAAACCACACTGATTCTTTTATATCTTACCATGTGAATTATTTACCTCTCATTCCGCTCATTTCTTATAGTCTTGATATTCTTACAACTAAAAGAAATGCTTTATTATTTTTCAGAGTGGATGAAGATGTCTTCCTTAGTTTATTCTTTTTAAATTCAGCTTAGATTTTCTGGTGTATAAATTTTGTGTTTTTATATAATTTAATTGATGAGTATTTTCTGGTTTCTCTTATTACTTGCTTTTTAGATCTCAGATTGCAATGAGAATTTTCTCTTTCTGCATGGTTCTTCTGATTTAATTTTTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGAAACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCACGATCTCAGCTCACTGCAACCTCTGTGTCCCGGGTTCAAGTAATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTGTAGGGGTGTACCACCATACCTGGCTAATTTTTGTATTTTTAGTAGAGATAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCTGATGATCCACCCTCCTCGTGAGCCAAAGTGTTGGGATTACAGGCGTGAGCCACTGTGCCCAGTCTGATTTATTTTTTCAATACTTAAAGAAAATCTGTTTAGAGCTTATTTGAGTAAATAAGATTTCTCTGCATTTCTTCAATTTTTCCTGTTACTGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGAAGTTTTGCTCTTGTTGCTGAGGCTGGAGTGCAATTGTGTGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCAACCACCATGCCTGGCTAAATTTATATTTTTAGTAGAGACGAGGTTTCTTCATGTTGGTCAGACTGGTCTCGAACTGCCGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCTGTCACTGTTGTTTCATGGTGCTTATTCTGTCACATCCAGTAGAATGTTAGATGTAACATTTTTAGATTTAACATTGGCAGTCTGTATTATTTGTGTGATAAATGACAAATGTTTATGTAATGTAGCAATACGCAGTTTTGCTCAGGTGTGGCCGGTGTGCAGGACTAGGTAATTTAGCAAGTACATGAGCCTAGCTAACAGCCTAGCATTTCCAACTCTATGGCTCTTTTGTTCTCTAGTACTTACTTTGGGATAGATGAATATGTCTCACTAAGTGTTTAAAAAATTTGTTTCTTTGTGGCAAACTGCACCAGTTGGAAAACTGGTTGTGGATGTTGAGCAAGAAAGACATCTAGACAGATGATTTTTATTGAGAAAAAGAAAAGCTTTGTAATCTATTTTAGCTCTGTTTTTATATAATGATAGAGGTTTTCAAATGATTACCTTTTCAACCAAAGTTTTCTTTGCTTTATAGAGGACAGTGACACTATAGTGTTAATTTACTGTTATCCAAAAATAATGTGATTTTTAAACATAGATAAACAAGAACAAAAGAGGCAAGACTGTTCATAAAAAATTGAGAATGTTTTAGTTTGCGATGGACTTCAAAACAAAATATTTACCATGTACTAACATATAATTTCATGTAAGTAAAGACAGTATAACCAGCTTTTAAATGGAATATTTTAGGCTTTATGGAAAACTCACTAAGTTATCCTTGTTCATTTTGCTGTGTATTGGTATAAGTGTCTTCGTGATATTTGTAAATTTGGAAAAATTTAAAGGTTTTTGGATGTGTGACTCATGAGTGTATAGAATCTACTCTGTTAAATTTTCATGAAATTCATTCATTTTCTGGGTTCTGGTCTGTTCCACTGATCTGATATTTCATTTTAGTTAGTGGTACCACCCTTCGATCTTTGTAGAGTATTTCTTGATACCCTTATTTATGTTTTTCCCCAAATGAGCTTTAAAATGATTTTTGTTGAGATTTAAGTAAATCAATCCTGAGGAGATTTTGATTGAGAATATATTTGTAAATTAGCTTGTCATTTTGCAGTATGTATTTTTCCCACTCTGCATTTGGAATGTCTCCCACTAGTCTATTTAAAAAATTAAAGGCCTTGCACCAAAGGTTTGAATGTCAAATAGTGAACACTATTTTAATGTTTTTTATAGTTTTCTTATAGTGTTCACAGATAACTTTTTATTTCGTATTATTCTATATTATGAAATCCTAAATTCTAAAATTTAAATAGAGACCTGGGTCTTACTCTGTTGCCCAGGTTGGAGTGCAGTGACATAGTGGTAGCTCACTTAACCTCGAACTCCTGGGCTCTAAGGATCCTCCTGCCTCAGCCTCCTGAGTGGCTAGGACTATAGGCACCTGCTACCACGTCCGGCTAATTTTTTTTATGTTTTGGAGAGATTGGATCTTGCTACATTACCCAGGCTGGTCTCCAACTTCTGGCCTTCAAGCGATCCTCCCACCTCAGCCTCCCAAAGTGCTGGGAATTATAGGCATGAGCCACCATGCCCAGCCCTGAAATCTCAATTTTCTAAGGTTAGAAGTCTTTGGCAGTTTGGAAAGGTTAGAAGTCTTTGGCAGTTTATGAGTCACTCACCATCCTGCATTTCTGCGACTCTCTTGAAGCTAAGAAGTATCTAATTCTTGCAGATGATGTGTGATGTGGATGACATTTGTTGAAGTAGTATTCAGAATGTGTAGGTTCAGCTAAAAGATAACTTTATTCATTTATTTATTTATTTAGAGACAGAGTTCACTCTGTTGCCCAGGCTGGAATGCAGTGGTGTGATCTCGGCTCACTGCAACCTCTGCCTCCTCAGTAGCTGGGACTATAGGTGCATGCCACGACACCCAGCTAATTTTTTTATTTTTAGTAGAGACGGGGTTTTACCATGTCGGCCAGGCTGGCCTCAAACTCCTGACCTCAAGTGATCTGCCCACCTCGGTCTCCCAAAGTGCTGGGATTACAGGCATGTGCCCCCGTGCCTGGCCAGGATAACATTATTTATAAATAATGCCAAGAGTGACTGAAGTGAACCTTACCAAAACATGAATGGAAGAGCTCTTGTTTTCTGGTGAGGAGTTCAGTAGAATGGGATTTTACTTCCCACGCTGGAGCAGTTTTTTCTTGTTTCAGTATTAACTGTTTCACAGTAGACAGTCAGTGCTATGGGTTGGCTAAAGATATAGTTGTATATCATCTTTTTCAGGTGATGTTTCTTTTGTTGAAGTAATTGTTTTCGTTCTCCTTCTAACAG
Seq C2 exon
AGATCTATTCGATCTTTTGCTAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCGGAGGAACTTGAAGCTGTTCAGAATATGGTATCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGTTGGATGAAACAAATAAAGGCACAAAAACAGAGGGTGAGACAGAAGTGAAGAAAGATGAGGCCGGAGAAAACTATTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209:ENST00000348403:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains