RnoINT0074288 @ rn6
Intron Retention
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22423890-22424540:+
Coord C1 exon
chr8:22423890-22423928
Coord A exon
chr8:22423929-22424310
Coord C2 exon
chr8:22424311-22424540
Length
382 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CGTAGTTTTCACATTTCCAGCGT
3' ss Score
5.84
Exon sequences
Seq C1 exon
GCATTGTATCATCATCACTTCATCACAAGAAGAAGAAGG
Seq A exon
GTGAGTAGGACGATGCTACTTGGAGGGAGACAACATTCACATTCCGTCCTGTCTAAGCCCTTCCTGTGCCTGATTGACCGATTAAACTACCATACCTGTGTGCGTAGAGGTCAAACCCAGACCGTATTGGTTTTGGTGCTGTCCGCGGTTTAAGGCTTCCATTGGGGTCTTGGAATATGTACCCCGCGGATAAGGGGGGACTACTGTAGTATAGCGATACGTAGACTGCCCCATTCCTGCTGCAGCCTGGAGAGTCTCCTCTCAGGTTCTGGGTCCTGTTCCTGTAGACTGCCTTCTCTGAAGGAAGGCATGGCACTAAGTGGCGAGGGGTGGGCTGCTGCCTGTCCTTGCATCATTTTTAGCGTAGTTTTCACATTTCCAG
Seq C2 exon
CGTCCCATGAGAATTTTTGTGAATGATGATCGCCATGTGATGGCAAAGCATTCTTCAGTATACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCACACTGAGCGGGCCCTCAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAAGCAGAAAATATGGACACACCCCCAGATGATGAGAGCAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741:ENSRNOT00000009354:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGTATCATCATCACTTCATCAC
R:
CAGCCCCTTCTTTGCTCTCAT
Band lengths:
268-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]