HsaINT0080503 @ hg38
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10670516-10671203:+
Coord C1 exon
chr19:10670516-10670608
Coord A exon
chr19:10670609-10670973
Coord C2 exon
chr19:10670974-10671203
Length
365 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CTTAATTCTCACATCCCTAGCGT
3' ss Score
6.7
Exon sequences
Seq C1 exon
AGTTGAAGTATTGATAACACCAAGGAACTCTATCACAATTTGAAAAGATAAGCAAAAGTTTGATTTCCAGACACTACAGAAGAAGTAAAAATG
Seq A exon
GTAAGTTTGTTTTTGATCACAGATACTGTTTCTTCACTCATGTACAGAGATGTTTGTAGCCTTTTCCAAAGCATTTGCTTCCATTACCATTTTTATTAGCCCTTTTGGATTATAAAGCAATATTATCTATTCTGTATTCCATTCTGATAGTGTAGGAACGAAGTCAGTGCCCCATTACTCCCACTGCCCAGAGACAACAGCTTTTCAGTTTGCTTGTCCCTCCTTGGTTCTTCAGTTGTGCTCCTGCAGGCTTTGCTTTTACACACGAGCGATATAGCATCATTCTGAATTGTGCAGCTTAAAAGATGAACGTTGGGCTGCTTGCTCTCTTTACATCATTTTTAACTTAATTCTCACATCCCTAG
Seq C2 exon
CGTCCAATGCGAATTTTTGTGAATGATGACCGCCATGTGATGGCAAAGCATTCTTCCGTTTATCCAACACAAGAGGAGCTGGAGGCAGTCCAGAACATGGTGTCCCACACGGAGCGGGCGCTCAAAGCTGTGTCCGACTGGATAGACGAGCAGGAAAAGGGTAGCAGCGAGCAGGCAGAGTCCGATAACATGGATGTGCCCCCAGAGGACGACAGTAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351:ENST00000407004:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.791
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGAAGTATTGATAACACCAAGGA
R:
CCAGCCCCTTCTTTACTGTCG
Band lengths:
323-688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development