MmuINT0081812 @ mm9
Intron Retention
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21192144-21193197:+
Coord C1 exon
chr9:21192144-21192241
Coord A exon
chr9:21192242-21192967
Coord C2 exon
chr9:21192968-21193197
Length
726 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CGTAGTTTTCGCATTTCCAGCGT
3' ss Score
5.99
Exon sequences
Seq C1 exon
ATAGTTGAAGTATTGGTAACACCAAGGAACTGTCACAATTTGAAAAGATAAGCCAAGACTGATTTCCAGACACTACAAGAAAAAAGGAGGGGAAAATG
Seq A exon
GTAAGACATTTTTTTCTTTGGTTATCAACACTTTTCCTTCACTTATGTACAGAGACAGCATGTCCCCAGAGCATTTGATGCTGTTAGCATTTTATCTTAGATATTTGAATTCTCTAAAATAATTACGTGTCACGATGTGAATACAGTAGTCCCCCCTTAGCTGTGTTCTCAATTCCCGCGGTTTCAGTTACCTGCGGTCCACCGCAGTCTGAAAATATTAAGTGGAAATTTCCAGAAAGAAAAAATTGATAAGTTTTAAATTGTGCACCGTCCTGATGCCTGCGTCATTCACCTCACTTCATCTCATCACGTAGGCATTGTATCATCATCACTTCATCACAAGAAGAAGAAGGGTGAGTAGGACGATGCTACTTGGAGACAACATTCACATTCCGTCCTGTCTAAGCCTTTCCTGTGCCCGATTGACCGATTAAACTACTGTACCTGTGTGTGTAGAGGCCAAACCCAGACCGTATTGGTTTTGGTGATGTCCGCGGTTTAAGGCTTCCATTGGGGTCTTGGAATGTGTACCCCGCGGATAAGGGGGGACTACTGTAGTATAGCGATACGTAGAGTGCCCCATTCCTGCTGCAGCCTGGAGAGTCTCCTCTCAGGTCCTGGGTCACGTTCCCATAGACTGTCTTCTGAAGGATGGAATGGTACTGAGGTGAGGGTGGGCTGCTGGCTGTCCTTGCATCATTTTTAGCGTAGTTTTCGCATTTCCAG
Seq C2 exon
CGTCCCATGAGAATTTTTGTGAATGATGATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGACGATGAGAGCAAAGAAGGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178-Ilf3:NM_001042709:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACACCAAGGAACTGTCACA
R:
GCCCCTTCTTTGCTCTCATCG
Band lengths:
311-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: